Mapping Genes Using Mapmaker

Molecular marker technology has changed our view of the genome. While we have been able to construct crosses and monitor linkage for nearly a century, now we have the unprecedented ability to routinely monitor segregation at an effectively unlimited number of loci in any reasonably designed population. RFLPs, AFLPs, microsatellites, STSs, SCARs and RAPDs are now routinely used to monitor genome-wide linkage disequilibrium. Since it became possible to scan an entire genome, it has become routine to compile enormous segregation datasets. These huge datasets then demanded analysis. Doing two point tests by hand became a lost art.

Below is a genetics dataset derived by the North American Barley Genome Mapping Project. The dataset is formatted to run under Mapmaker and Mapmaker/QTL. The top line describes the type of population being analyzed (in this case a simple backcross population). The structure of the dataset is described in the second line. In this case, there are 150 individuals in the population which have been assayed for genotype at 435 loci. At the end of the dataset are appended 20 trait datasets. In each of these a phenotypic value is assigned to each of the 150 doubled haploids used in this experiment.

data type f2 backcross

150 435 20 0 symbols A=A B=H

*Nar1 ABBBAABBABBABBBBBBABAABAABABBABAABA AAABAABABBAABBBBBAAABBABABABBBAABABABBAAABBBBAAAAABABAA BABABAAAAAAAAAA AABBABABBAABBBABAABBBBABBAAABBBBBBA BAAAABABAA

*Ale BABBAAABBABBAAAAABBAAABAAABAAAABBBAABAAABBBBBBAAAAA---- ----ABABBAAAABBAABAAAB-AABBBABBBBAAAABAAAAAAB-BBAAAAAAB BABBBBAABABAAABBBABAABAAAAAABBBABBABBBAB

*Dhn6 AAABAAAABBAA-ABBBBBABABAAABAAAABBABBBBBAABBBABBBA--ABAB ABABBAAABABBBAABAAAB ABABAAAAAAABAAABABBAABABA BAABABAABAAAABBBAAABAAAAA BAABBAAABBBBBBABABBBBAAAB

*Nar7 AABBAAAAAAABBBAAAAABBBBBBABBBBAABBBABBAAAAAAA ABBBA ---------ABAAAAAABBBABBABABBBABAAABAAABBBAABBABBABABAB BBAAAABABBAABBABAAABA BBABAAABBBBBABBABBABBAABB

*Glx ABBBBBAABBAA--BABABABAABABAAABAAAABBBABABAAAABBBBABAAAA ABABBABBABBBBBBBBBABBABAAABBABAAABBAAABAAAAAABAAAAABBAA ABBBAABBABBBBAABAABBABABBBBBBBAABABBBAB-

*ABC451 AAABABAABBABABABABAAAAAAABBAABBBAAAABAABBBBAAAABABAAAABABAABAB-ABABBBABBBABBABA-AAABAABABBAABABABBBABAABBB-AAAB ABAA--AAABABAAABBABBABA-ABAAAAABABBAAAB

*ABG452 BAAAAABABB-BABBAABAAABBABAABABABABBBBBBBABBAAAAABABBBBB BABABAABBBBBBBBBABBABBBA-AABAABAABABABBABBBBBAAAABB-BBAA AAAB--BBABAAAABB-ABBBBB-AAABBBBABBBABAB

*ABG453 ABABAABBABBABBAABBABAABBAABABABABBABABBBABBABAABABAAAAB AAAABBABAAABAAABBBAABBBAAAABB-ABABABBBBABABBABAABBBBAABB AAAAAAABBBBABBBABABBBBBABBBBAABABABAABB

*ABC454 BAABAB-AABABABABBABAAAABBBBAAABBAAAABABBBBBAAAAAABAAAAB ABBBAABAABABBBBBAAAAAABAAAAABBABABBBABABABBBBBBBBBBAAAAB ABAAAAABABAAABAABBBBABAABBAAAAABABBAAAA

*ABC455 AAAABABABAABBAABAABBBBBAAAAAABAABABABBBABBBAABAABAAAABB ABBBAAABABBBBA-AABBBAAAABAAAA-BBABAAAAA-AAABABABABBAAAAB BBBBAAAAAAABAABABBABBABAA-BABBAAB-AABBA

*PSR128 BABBAAABBABAAAAAABBAAABBAABAAAABBBAABAAAABABBBAAAAAABAA ABAABBB-BAAAABBBABAAABBABBBBABABBAABABAAAAAABBBAAAAABABB ABBABAABAAAABBBBABAABAAABAABBBABB-B-BAB

*PSR156 ABAAABBBABBBAABABBABAAABBABABBBABBABABBBBBBABABBABAAAAA BABABBAAAABBABABBBAABBBAAAAABAABABABBBBABABBABAABBBBAAAB AAABAAABBBBABBBABABBBBAABABAAABAB-BABBB

*ABG458 ABBBBBBAABBABBBAAB-BBBB-BABBABAABBBAABABBAAAAAABAAAABBA ABBAABA-BBAAABBABBABAABBAAAA-BAAABBB-ABBAABBBAAAABBAABAB ABBBAAABAAABBABBBAAAABABBBBBBABAABBAABB

*ABG459 BAABABBABBABABABBABAAAA-BBBAAABBAAAAAABBBBBBAAAABBAAAAB ABBBAABAABABBBBBAAAABABAAAAABBABABBBABABBABBBABBBBBAAAAB ABAAAAAAABAAABAABBBAABAABBAAAAABABBAAAA

*ABG460 ABAABBBAABAAAABBBAABBABBBABBBBABBBBBABABBBBABABBBAAAAAB AABAABB-AAABABAABBAABABB-AABBBABBBAAABBABAAABBAABBB-ABAB ABAB--AABBBABBBBBABBAAB-BBBAAABBBABAABA

*Prx2 AAABBAA-AA-B--ABA-B-BBAABAAAAABABBAAAAAAAAABBAAABBABAAB ABBABAABAAAAAAAAAABAAABAABAABBAABABBBABAABBBBBAAAAAABAAA BAAABAAABBBBBBAABBBABABAAABBBAABBAAABBA

*Brz ABBABBB-BA-B-BABAABABBABAAAABBAABABABBBABBAAABBABAAAABB ABABBABBABBBBABABBABBA--AA-BABBBAB-AAABAAAABBB-B-BBBBAA BBBBBAAAAABBBAABAABBABABBBBBBBBABB-AAB--

*iEst5 ABBBBBAABBAAAABABABABAABABAA-BAAAABBBABABA---BB-BABAAAA ABABBABBABBBBBBBBBABBABBAABBABAAAB-AAABAAAAAABAAAAABBAAA BBBAABBABBBBAABAAB-ABABBBBBBBAABABBBABB

*iEst9 BBBAAAABBABBBABABBBBAAABBBAAAABBBBBAAABBBBAABAAABBAAABB ABABAAABAABABBABBAABABBBBAABABBBABABBBBBAAABBBAABAABBABB ABBBBBBBABABAABBAAABABABAABAAABBAABBBBA

*iPgd2 BABBBBBAABBBABBBBABBAABBBAABAAAAAABBAABAABAABABABABABAB AABABBABAABAAAABBAABBBBBBABBAABBABABABBBAABABBBBABBABABA BABABAABABBBBABABBBBBAAABAAAABBAAAAAAAA

*RbcS BAABABAABBBABBABBABBAABBBBBABABBBAAAAABBBBBBAABABBAAAAB ABBBAAAAABABABBAAAAABA-BAABABAABAABAABABBABBBABBBBABBBAA BBAAAAAAABAAABAABBBAABAABAAAAAABABBBBAA

*Bmy1 ABBBBAB------AA------BABBBABBBBABBBABABABABABBABAAABBBB AABBBABAAAABABBBABABAAAAABAAAABBBAAABAAAAAABBBBAABBAAAA ABBAAABBBAABABABAAABABBBBBBBBBBABBBABAA-

*Bmy2 BAA-ABA------BA------AAA--BAAABBAABABAABBBBAAAABABAAAAB AB--BABBABABABBBBAABAA-A---ABBABABBAABABABBBABABBBBAAA- BABAAAAAAABAAAAAABABBABAABBABAAABABBAAA-

*Amy1 AABBAAAA-----BAAAAABBBBBBABABBAABBBABBAAAABABABBBAAABAB BBBAABAAAAABBBBABBABAB-BABAAABAAAABBAABBABBAB-BABB-A-A-B ABB-ABBABAAABABBABAAABBBBBBBBABBABBAAB-

*Lth ABB-AAB-A-----BBBBBBAABAABABBABAABAAAABAABABBAABBBBBAAA BBABABABBBBBBABABBAA-----AAAAABA-AABABA-AAAA-A-AAAABBBA AABBAAB-BABAAB-BBABBABABBABBBABA-BABABA-

*ABC302 BABBAAABBABAAAAAABBAAABBAABAAAABBBAABAAAABABBBAAAAAABAA ABAABBBBBAAAABBBABAAABBAABBBABABBAABABAAAAAABBBBAAAABA-B ABBABAABAAAABBBBABAABAAABAABBBABBABBBAB

*PSR167B AB-BB-B-------B-A-ABBBBBBABBABAAB-BAABABBAAAAAABAAAABBA ABBAABAABBAABBBABBAAAA---AAAABAA-BBBAAB-AABBB-AAAB-A-B-B ABB-AAABAAABB-BBBAAAABABBBB-BABAABBAAB-

*PSR167 ABBBAAB------BB---BBAABAABABBABAA-AAAABAABABBAABBBBBAAA BBABABABBBBBBABABBAAAB---AAAAABA-AABABABAAAAAABAAA-B-B-A ABB-AB-BABAAB-BBABBABABBABB-ABA-BABABA-

*Hor1 ABABAABABB-BBBBAABBBABABBAAABBABAAABABBBABAABABBAABABBB BABBBABBBAAAAABBBBABABBABABBAABBAAABBBBBABBBAAABABBBBBAA ABBBBAABAABAABBBAAAAAAAAAABABABBBAABBAA

*Hor2 ABABBABA-B-BBBBA-BBBABABBAAABBAAAAABAABABBAABABBAAAABAA BABABABBBAAAAABBBBABAB-ABAB-BABBAABBBBBBABBB-BABABBBBBAA ABBBAAABBABAABBBABAAAAAAAABABABBBAABBA-

*Ubi1 AAB-BAB----B-A-AA--BBBBAAABBABAABABAABBABBBBABBABAAAABB AABBBAABABBBBAABABBBBAA-BBAAABBBABAAAAAABAAAABABBBBAAABB BBBA-AAAAAABA-BABAABBAAABBABBAAABAAABA-

*PSR154 AA--A---------A----ABBAAB--ABAABA-BABAAAAABABAABBAAABAB BBBBABAAAAABABBABBBBAB--BBAAAAAAAAABAABBABBBAABABBBBBAA BABBAABBABAAABABBABAAABBBBBBBAABBAABAABB

*Ica1 B-AAA-----ABBBAAA-AAABBBBAABBBABAABBBBBBABAABAABBABBBBB BABBBAABBBBBAABBABBBBBBAAABBAABBABABABBABBBBAAABABBBBBA AABABBBBBABAAABBBAABBBBBAAABABBBBBBBABAA

*Cxp3 ABBBAAB-AB-A-BBBBBABAABBAA-B-BBAA--AAAABABABBAABB--BAAA ABAAABABBBAABABBBBAAAB---AAAAAAAAAABABBBAABBBAAAAAAA-BAB ABBAA---ABABBABBABBAABBBBBBBAAAAABBABA-

*Ltp1 BABBAAA-AAABAAAAAABAAABBABBABAABBBAABAAABBBBBAAAABAABAA BAAAAAAABBAAAAABAABABABBAABBBBBBBBAAAABAAABAABABBAAAAAAB ABBBBAABABAAABBBABAABAAAAAABBAAABAABBAB

*Prx1A A-BBBBA----A-ABAB---BAABA-AAABAAA-BBBAB-BAAAABBBBABAAAA ABABBABBABBBBABBBBABBA-AAABBABAA-BBAAABAAAAAA-AAAA-B-A-A BBB--BBABBBBAABAABBABABBBBB-BAA-ABBBAB-

*ABG312 BBBBBB-A--A-AA--B---BAB--B-AABAAAABBBBB-BAAAABBBBABBAAA ABABBABB-BBBBBBBBBAAABABAABBABA--BBAABB-BAAA-BAAB-ABBBAA BBBAA-BAABB---BAABBAB-BBB-AABAABAABBABB

*mSrh BABAAAABBABABAAABBBBAAABABBAAAABABAABAABAAAAABAAABAAAAA ABABABBBBAAAAAABAAAAABBBABABABBBBAABABABAAABBBBBAABBBABB ABBABAABAAAABBBBABAABAAAABABBBABBABBAAA

*mPub AAABAAAABBBABBAABBAAAAAAAABAAABBBBABAAABBBBABAAAABABABB BAAABBBBAAAABAAAAABABBBBBBBBBAABBBAABBBAABBBABBBABAAABBA BBAABBBAABAABABBBAAAABBBABABBABAABBBAAB

*PSR106 ABBBBABA-BBABBBAABABAABBBABBBBAABBBABAABABABAAABBABBBAA ABAAABAABBAABABBBBAAABBBAAAAAAAAABBBAABBAABBBAAAABBAABAB ABBBAAABABABBABBBBAAABABBBBBBABAABBABBB

*PSR106B ABBBBA-B-BABBBB-A-BBBBBBB-BAAB-ABABBABBBBBBBBBBABBABBAB BBBBAAAABBAABAABAAAAAABBBBAAAABAABAABBBBBAABAAAAABAABBA A BBBAAA-ABBBBABABAAAAABBABBBBBAAABBAABAB

*ksuA3A BABBAAA-AAABAAAAAABAAABBABBABAABBBAABAAABBBBBAAAABAABAA AAAAAAABBAAAAABAABABABBA-BBBBBBBBAAAABAAABAABABBAAAAAABB ABBBBAABABAAABBBABAABAAAAAABBAAABAABBAB

*ksuA3B ABBBABB-AABBBBAAABABBBBBBABBABAABBBAABABBAAAAAABAAAABBA BBBAABAABBAABBBABBAAAABBABAAABAAABBBAABBAABB-AAAABBAAAAB ABBBAAABAAABBABBBAAAABABBBABBABAABAAABB

*ksuA3C BBBAABB--BAAAABABBABBBABBABABBBABBABBBABBBBABABBBAAAAAA BABABBBAAABBABABBBAABABAAA-ABAABABABABBABAABABAABBBBABAB ABABAAAABBBABBBBBBBBBAAABABAAABABABABBB

*ksuA3D ---BAA--AAABBBA-A--BBABB-ABBBBAABBBAABAAAAAAAAA--AAABAA BBBAABAABBAABBBABBABA----B-AAB-B-BBB-AB-ABBABABABBBA-AAB ABBAAA-AAAAAB-BB-BAAABBB-BABBA-AABAAABB

*ksuD17 ABBBA----------------ABBBABBBBA---B-ABAABAAAAAABBAAAB BABBBAABAABBAABBBABBABABBBABAAABABABBBAABBAABABAAAABBAAA ABABBAAAAAAAABBABBBAAAABABBBABBABAABAAABB

*Cab1 ABAAAAABAABB-ABABBBBAAABBBAABBBABBBAAABBBAABBABABBAAABB AAABAAABAABABBBBABABABBBBAABAABBABABBBBBAABABBAA-AABBABA ABBBBAABABABAABBBBABABBBBABAAABBAABBBB-

*Cab2 AABBBBA-B--B-BABBBBBABBBB-BB------BBBBBBAAAABAAABAAAAAB AABABBBAAABAAAABBAABB---BBBBAAABAB-B-BBBA-BABB-A-BBABABA BBAA-BBBAABBA-BABABBAAAABAAAABB-AA-AA--

*ABC307A BAAAABBAABBBABBBBABBAABBBAABAAABBBBABBBAABAABABABABABAB AABABBABAABBABAAAABBBBBABABBAABBABABABBAABBABBBBAABABAAA BABABAABABAABABABBBBBAABBAAAABBABAAAAAA

*ABC307B ABABA--B-BBAB-ABBBABAABB-ABA--BABBABABABABBABAAAABABAAB AAAABBABAAABAAABBBAABBBAAAABBAABABAABBB-BABAABAABBB-AABB BAAAAA-BABA-BBBABAAABBBABABB-BBABABAABB

*ksuH11 -BBBB---------------BBAB-BABBBBABBBABABABABABBABA-ABB BBAABBB-BA-AABABBA-BABAAAAABAAAABBBAAABAAAAAAB--BAABBAAA ABBBAAA-BBAABABABAAABAB-BBBBBBBBABBBABAAA

*WG420 ABBBBABBABABBAABAABBBBBBBABAABBABABBABBBBBABBBBABA-BBAB B-BBBAABABBBBA-BAAA-AABABBBAAABBABAABAAABAAAABAABBAAAAAA BBBABAAAABBBABBBAAABBBBABBBBBAAABBAABAB

*CDO475 A--BBBB------AA-BA-AAAABAAAAABAAABBBBABABAAAABBABABAAAA BBABBABBABBBAABBBBABBA-----B-BAA-BBAAABAAAAAA-AAAAABBA-A BBB--B-ABBBBA-BAABBABABBBBBBB-ABABBBBB-

*BCD351e BABAAAABBABA-AAABBBBAAABABBAAAABABAABABBAAAAABAAABAAAAA AB-BA-B--AAAA---AAA-AB-BBBABABBBBAABABABAAABBBBBAABBBABB ABBABAABAAAABBBBABAABAAAABABBBABBABBAAA

*BCD351F BAABABAABBBABBABBABBAABBBBBABABBBAAAAABBBBBBAABABBAAAAB ABBBAABAABABAB-AAAABBABBAABABAA-AABAABABB-BBBABBBBAABAAA BBAAAAAAABAAABAABBBAABAABAAAA-ABABBBB--

*BCD351C BAAAAABABBABABBAABAAABBABAABABABABBBBBBBABBAAAAABABBBBB BABABAABBBBBAB-BABBBBBBAAAABAABAABABABBABBBBBAAAABBABBAA AAABBBBBABAAAABBBABBBBBBAAABBBBABBBABAB

*BCD351D AAABAAAABBAAB-BBBBAABAAABABAAAABBAABBABBABBBABBBBBBABAA ABABBBABAABBBA-BABABABBBAABAAAABAAABABBAABABABAABBBAABBA AABBBAAABAABAABAABAAAABBBBBBABABABAAAAA

*WG789A ABBBBBBABBAAAAAABABAAAABAAAAABAAABBBBABABAAAABBBB-BAAAA BBABBABBABBBBABBBBABBABAAABBABAAABBAAABAAAAAABAAAAABBAAA BBBAABBABBBBAABAABBABABBBBBBBAABABBBBBB

*WG789B BAAAAABABBABABBAABAAABBABAABABABABBBBBBBABBAAAAAB-BBBBB BABABAABBBBBABBBABBBBBBAAAABAABAABABABBABBBBBAAAABBABBAA AAABBBBBABAAAABBBABBBBBBAAABBBBABBBABAB

*BCD828 BBBAABBBABAAAAB-BB-BBBABBABABBBABBABBBABBBBABABBBAAAAAA BABABBBAAABBABABBBAABBBAAAAABAABABABABBABAABABAABBBBAAAB ABABAAAABBBABBBBBBBBBAAABABAAABABABABBB

*Gln2 AAABABBBAABAABBBABBABAABBBAAABBABBAABAABAABBAAAAABBBAAB BBABAABAAAAAAAABABAABA-ABAABBABBAABBAAAABBBBBBAAAAAAABAA AAAABAABBBBBABAABBBAAAAAAAABBAABBAAAABB

*BCD298B ABBBBAABABABBABBAABBBBBBBBBAABBABABBABBBB-BBBBBABBABBAB BBBBAAAABBAABAABAAAAAABBBBAAAABAABAABBBBBAABAAA-ABAABBAA BBBAAAAABBBBABABAAAAABBABBBBBAAABBAABAB

*Chs1A BAABAAA----A-BA--------BBBBABABB-AAAAABBBBBBAABABAAAAAB ABBBABAAABAAABBAAAAABABBAA-ABAAB-A-AAAABAABBBABBBBABAB- ABBAABBBAAABBABABBBBAABAABAAAB-ABAABBBA-

*Chs1b BAABAAA----A-BA--------BBBBABABB-AAAAABBBBBBAABABAAAAAB ABBBBBAAABAAABBAAAAABABBAA-ABAAB-A-AAAABAABBBABBBBABAB- ABBAABBBAAABBABABBBBAABAABAAAB-ABAABBBA-

*Chs3 --ABAAB------BB--------BB-AABBAB-AABABBBAB--BABBAABABBB BABBBABBBAAAAABBBBABABBA-A-B-ABB-A-BBBBBA--BAAAB-BBBBB- AABBBBAABAABAABBBAAAAAAAAAABABA--BA-BBA-

*ABC305 ABBBBABAABABBABAAABBBBBAAABBABBABABAABBABBBBBBBABAABAAB AABBBAABABBBBAABAABAAAAABBBAABBBABAAAAAABAAAABABBBBAAABA BBBABAAAABBBABBBAAABBBAABBABBAAABBAABAA

*ksuA1A ABBABBB-BBABAABAAABAABABAAAABBAABBBBBABABAAAABBABAAAAAB BBABBABBABBBAABABBABBABAAABBABBBABBAAABAAAAABBABAABBBAAB BBBBAAAAABBBAABAABBABABBBBBBBBABBBBBBBB

*ksuA1B B-BAA---BABABAA-B-B- AAABABBAAAABABAABAABAAAAABAAABAAAAAABABABBBBAAAAAABAAAA ABBBABABABB-BAABABABAAABBBBBAABBBABBABBABAABAAAABBBBABA ABAAAABABBBABBABBAAA

*His3A ABBBBBA-BB-A--BABABABAABABAAABAAABBBBABABAAAABBBBABAAAA ABABBABBABBBBABBBBABBA-AAABBABAAABBAAABAAAAA-BAAAA-BBAAA BBBAABBABBBBA-BAABBABABBBBBBBAABABBBAB-

*Pgk2A AAAAAAB-BB-A-ABBBA-ABABAAABAAAABBABBBBBAABBBABBBABBABAB ABABBAAABABBAAABAAABAAAB-A-AAABB-A-BABBAABABBBAABABAABAA AABBBAAABAABAABAABBAAABBBBBBABABBBBBAA-

*Pgk2B ABBBBAB--B-B-AAB---BBBBAAABBABBABABAABBABBBBBBBABAABABB AABBBAABABBBBAABAABAAAAA---AABBB-B-AAAAABAAAABABBBBAAABA BBBABAAAABBBA-BBAAABBBAABBABB-AABAAABA-

*ksuD22 AAAAABBBABAAAABBABAABAABBBBABBBBABAABABBABABAAABABABAAB BBABAABAAAABABABABABBAAABAABBABBAABBAAABBABBBBAAAAAAABAA A-AAAAABBBABABAABBBAA-AAABABBAAABAAAAA-

*ABG366 ABAABABAAAABBAABBAAAABBABBAABAAABABBBBAABBBBBAABBAABBBB AABBBABAAABBAABBAAABAAAAAB-AAAAABABABABAA-BABB-AABAAAAAA -AA-AABAA-BB-BAAAAAB-AAABABAAABA-------

*ABG356 BAABABAA---B-BA-----BAAAABBAABBBAABABAABBBBB-AABABAAAAB ABAA-ABBABABABBBBBABAA------BBAB-BBAABA-ABBBABABBBBAAAA BA-AA--AAABAAAAAABABBA-AABBA-A-A--------

*ksuD14C AAB-BABB--A-BAABA-BBBBBBBABAABBABABBABBBBBABBBBABAABBAB BABBBAABABBBBAABAAAAAABA-B-AAABBABAABAAABAAAABAABBAABAAA BBBABAAAABBBABBBAAABBBBABBBBBAAABBAABAB

*ABG377 ABABABBBABBBBAAABBABAABBAABABABABB-BABBBABBABABBABAAAAA BABABBABAABBABABBBAABBBAAA-ABAABABABBBBAB-BBABAABBBBAAAB A-ABAA-BBBBABBBABABBBBBABABAAABAB--AABB

*ABG358 BAABABBABBABABABBABAAABBBBBAAABBBAAAAABBBBBBAAAABBAAAAB ABBBAABAABABABBBAAABBABBAAAABBABAABBABABBABBBABBBBAABAAB A-AAAAAAABAAABAABBBAABAABBAAAAABABBAAAA

*CDO99 B-AAAABABBA-BB--A--B-BBBB--BBBABAAABBBBBABAABABBAABBBBB BABBBAABBABBAABBBBBBBBBABA-BAABB-BABABBBABBBAAABABBBBBAA ABBBBBBBAABAABBBAAABBBBAAABABBBBBBABBAA

*CDO348B BABBAAABB-BBAAAAABB-AABBAA-AAAABBBAABAAABBBBBBAAAAAABAA ABAAABBBBAAAABBAABAAABBAABBBABBBBAAAABAAAAAABABBAAAAAAB B ABBBBAABABAAABBBABAABAAAAAABBBABBABBBAB

*Pcr1 AAABABABAA-BA-BBABBABBAABBAAAABABBAAAAAAAAABBAAABBABAAB BBABAABAAAAAAAAAABAABBAABAABBAABAABBABAABBBBBBABAAAAAAA A BAAABAAABBBBBBAABBBABABAAABBBAABBAAABBB

*Pcr2 BAAAB-B-BB-B--BAABAAABBABAABABABABBBBBBBABBAAAAABABB-B- BA-A---BBBBBAB--A-BBBBB-AAABAABAABABABBABBBBBAAAABBABBAA AAABBBBBABAAAABBBABBBBBBAAABBBB-BBBABA-

*BCD129 ABBBBBAABBAAAABABABABAAAABAAABAAAABBBABABAAAABBBBABBAAA ABABBABBABBBBBBBBB-BBBABAABBABAAABBAABAABAAA-BAABAABBAAA BBBAABBABBBBAABAABBAB-BBBBABBAABABBBABB

*Rrn1 ABBBABBAAABABBAAA-ABBBBBB-BBABAABBBAABABBAAAAAABAAAABBA ABBAABAABBAABBBABBAAAABBAB-AABAAABBBAABBAABBBAAAABBAAAAB ABBBAAABAAABBABBBAAAABABBBABBABAABAAABB

*ABR315 -A-AAAAABBAABABBBABABABAAABAAAABBABBB--AABBBBBBBBBBABAB ABABBAAABABBAAABAAABAABBAAAAAABB-A-BABBAABA-BBAABABA-BAA A-BBBAAABAABAABAABBAAABBBBBBABABBBBBA--

*ksuF2A B--AA---------------ABBA-AABABA---BBBBBBABBAAA-ABABBB BBBA-ABAABBBBBABBBABBBB-BAAAAB-ABA--ABABBABBBBBAAAABBAB- -AAAABBBBBA-AAA-BBBABBBBBAAAABB-BABBBABA-

*ksuF2B BBBAA----------------BABBABABBBABBABBBABBBBABABBBAAAA AABAB-BBBAAABBABABBBA-BA---A-ABA-B-B-BABB-BAABABAABBBBAB -BABABAAAABBBABBBBBBBBBAAABABAA-BABABABB-

*ABC306 BAA-ABA----B--AB----BAAAABBAAABBAABABAABBBBAAAABABAAAAB ABAABABBABABABBBBBABAABABAAABBAB-BBAABABABBBABABBBBAAAAB ABAAAAAAABAAA-AABABBABAABBABAAABABBAAA-

*Amy2 AAAAAABABBBBBABAAABBBBBAAAABABAABABABBBABBBAABAABAAAABB ABABAAABABBBBAAAABBBAAAABAAAABBBABAAAAAAAAABABABABBAAAB B BBBBAAAAAAABABBABAABBABAABBABBAABAAABBA

*CDO373 A-ABAB-B--B-A-B-A---BAAB---AABB-B-AA----------A---BBAAB BB-BA-BAAA-AAAABAB--BAAABAABBABBAABBAAAABBBB-BAAAAAAABA AAAAAB-ABBBBBABAABBBAA-AAAAABBAABBAAAABB

*ksuF15 A-ABAB-A--A-AA-------AABB--AABBBAAAABABBABAAAAABABAAAAB BBAABABBAAABABABBAABBABA----BABB-ABAAAABB--BAAAABBBA-AA BAAAA----ABABA-ABBABAABAAABAAAAAABBAAAAB

*BCD265B A-ABAAAA--A-BBBBB---BAAABABAAAABBABBBBBBABBBABBBABBABAB ABABBAABBABBBAABAAABABAB-A-AAAABAAABABBAA--BABAABABAABBA AABBBA-ABAAAA-BAABBAAABBBBBBA-ABBBBAAAA

*ABG373 AABBBBAABAABABABBBBBABBBBABBAAAAAABBBBABAAAABAABBAAABAB BABABBBAAABAAAABBAABBBABBBBBAAABABABABBBA-BAAABABBBABABA B-AAABBAAABAAABABABBAAAABAAAABBAAAAAAAA

*ABG461 ABBBBABBABABBAABAABBBBBBBABAABBABABBABBBBBABBBBABAABBAB BABBBAABABBBBAABAAAAAABABBBAAABBABAABAA-BAAAABAABBAAAABA BBBABAAAABBBABBBAAABBBBAB-BBBAAABAAABAA

*ABG462 BBBAABBBABAAAABABBABBBABBABABBBABBABBBABBBBABABBBAAAAAA BABABBBAAABBAB-BBBA-BABAAAAAB-ABAB-BABB-BAABABAABBBBABAB ABAB-AAABBBABBBBBBBBBAAAB-BAAABABABABBB

*ABG463 ABAAAABBAABBABAABBBBABABBBAABBAABBAAABBABABBBABABAAAABB AABBAAABAAABBBBBABABAABBBBABAAABABBABBBAAABABBBBBBABBBBA BAABAAABABABAAABBBBBBBBBBAAAAABAAABA-BA

*ABG464 BAA-ABBAABBBABBBAAABAABABAABAAABBBBABBBBABAABAAABABABAB BABABBABAABBBBABAABABBBABABBAABBABABABBAABAABBA-AA-ABAAA BAAABAABAB-ABABABBBBBAABAAAAABBAB-AABAA

*ABC465 ABAABBBABAABABABAABABBABAAAABBAABABABBBABBAAABBAB-AAABB ABABBABBABBBBA-ABBA-AAB-BABAABBBABBAAABAA-ABBBABBBBBBAAB BBBBAAAAAA-BAABAABBBBABBBBBBBBABBAAABBA

*ABG466 ABBBAABBABBBBBBBBBABAABAABABBABAABAAAABAABABBAABBBBBAAA BBABABA-BB-ABA-ABBA-ABBBBAAAAABAB---ABABAAAAAAAAAAA---AB ABBAABBBABAABBBBABBAAABBBBBBABAAAABABAA

*WG719 AAAAAA-A--A--AABAABBBBBAAAAAABAA-ABABBBABBBAABAABAAAABB ABBBAAABABB-BA-AABB-AAAABAAAABBBABAAAAABAAABA-ABABBAAA-B BBBBAAAAAAABAABABBA-BABAABBABBAABAAABBA

*ABC468 BAABABAAABABABABABAABAAAA-BAAABBAABABAABBBBAAAABA-AAAAB ABAABABBABABABBBBAA-AAB-AAAABBABAB-AABABABBBA-ABBBBAAAAB ABAAAAAAAB-AAAAABABBABAABAABAAABABBAAAB

*WG516 BAABAAAABB---BABBABBAABBB-BABABBBAAAAABBBBBBAA-ABAAAAAB ABBBABAAABA-ABBAAAA-BAB-AABABAABA-BAAAABAABBB-BB-BA-ABAA BBAABBBAAA-AABABBBBAABAABAAAAAABAABBBAA

*PSR129 ABBBBABAAB---AABAABBBBB-A-BBABBA-A-AABBABBBBBBBAB-ABABB AABBBAABABBBBAABAAB-AAAABBAAABBBABAAAAAABAAAABABBBAAAABA BBBA-AAAABBBABBBAAABBAAABBABBAAABAAABAA

*ABG471 ABAABB-AAB--AABBBAABBABBBABBBBABBBBBABABBBBABABBB-AAAAB BABAABBAAAABAB-ABBAABABBAAAABBABBBAAABBABAABBBAABBBBABAB ABABAAAABBBABBBBBABBAABBB-BAAABBB-BAABB

*ABG472 AAAABAAA--A-BAAB-A-AABBABABAAAABB-BBBBAAABBBBAABB-ABBBB ABBBBABABABBAA-BAAABAABAAAAAAABBBABBABBAABBABBBABABAAB-A AAAAAAABBAAABABAAABAAAAABAABABABBBBBAAA

*ABG473 BABAAAABBAB-BAAABBBBAAABABBAAAABABAABABBAAAAAB-AABA---- AA-BABBBBAAAAAABAAA-ABA-BBABABBBBAABABABAAABB-BBA-BBBA-B ABBABAAAAAAABABBABAABAAAAAABBBAB-BBBAAA

*ABG474 ABBBAABAAABBBBBAABABBBBBBABBBBAABBBAABABBAAAAAABA-AABBA BBBAABAABBAABBBABBA-ABB-ABAAABABAB-BAABBAABBBAAAABBAAA-B --BAAAAAAAABBABBBAAAABABBAABBABAABAAABB

*WG644 BBBAAAABBABBBABA-BBBAAA-BBAAAABBBBBAAABBBAAABAAAABAAABB ABABAAA-AABABAABBAABABBBBAAB-BBBABABBBBBAAABBBAABAABBABB ABBBBABBABABAABBAAABABABAABAAABBBABBABA

*iBgl AABBAAAABBAAABBABBAABAAAABAAAAAABBBBAAABBABABABBABABABB BAAABBBBABBABAAAAABABBBBBBBBBAABBBA-BAAAABBBBBBBABAABBB ABBAABBBAABBBBABBBABAABBBAAABBBBAABABAAB

*iAco2 AAAABABAABABBAABBAAAABBABBBABAAABABBBBAABBBBBAABBAABBBB AABBBABAAABBAABBAAABAAAAABAAAAAABABAAABAABBABBBAABAABAA A AAAAAAABAABABABABAAAAAAABBABABABBBABAAA

*CDO673 AAAAAA-A--A-BAB-A---BBB--AAAABAABABABBBA-BBAA-AA--AAABB ABBBAAABABBBBABAAB--AAAABAAAABBBABAAAAAAAAABABABABBAAABB BBBBAAAAAAABAABABBABBABAABBABBAABAAABBA

*WG530 BABBAAABBABBAAAAAABAAABAABBABAABBBAABAAABBBBBAAAAAAABAA ABAAAAAABAAAABBAABABABBAABBBABBBBAAAABAAABAABABBAAAAAAB B ABBBBAABABAAABBBABAABAAAAAABBBABBAABBAB

*WG541 BABBAAABAAABAAAAAABAAABAABBABAABBBAABAAABBBBBAAAAAAABAA AAAAAAAABAAAABBABBABABBAABBBABBBBAAAABAAABAABABBAAAAAAB B ABBBBAABABAAABBBABAABAAAAAABBBAABAABBAB

*WG1026B AAAAAAAABBAABABBBBBABABAAABAAAABBABBBBBAABBBABBBABBABAB ABABBAAABABBB--BAAABAAABAAAAAAABAAABABBAABABBBAABABAABAA AABBBAAABAAAAABAABBAAABBBBBBABABBBBAAAB

*Rrn2 BAABA-----A-A---A----ABBA-AA-AAB--AAB-AAB-BBBAA-AB-AAAA AAAA-BABBA-AAABAABBBA-BAAB-BBBBB-A---BA-ABAAB-BBAAAA-AB BABBB-A-BA--A-BBBABAA-AAA-AABB-AABAABBAB

*BCD98 BAAAAABABBABBBAAABBBABBBBAABBBABAAABBBBBABAABABBAABBBBB BABBBAABBABBAABBBBBBBBBABABBAABBABABABBBABBBAAABABBBBBAA ABBBBBBBAABAABBBAAABBBBAAABABBBBBBABBAA

*BG123a AAABBAA-AA-B-BABABBABBAABAAAAABABBAAAAAAAAABBAAABBABAAB BBABABBAAAAAAAAAABAAABA--AABBAABABBBABAABBBBBA-AAAABAAAA BAAABAAABBBBBBAABBBABABABABBBAABBAAAB--

*BG123b BABBAAA-BA-B-AAAAABAAABAABBABAABBBAABAAABBBBBAAAAAAABAA ABAAAAABBAAAABBAABABAB---BBBABBBBAAAABAAAB-ABA-B-AAAAABB ABBBBAABAB-A--BBABAABAAA-AABBBA-B--BB--

*CDO749 BAAB-ABBAA-BAAAAAABAAABBABAABAABBBAABAAABBBBBAAAABAAAAA AAAAABABBAAABABAABBBAB-AABBBBBBBBAAAABAAABAABABBAAABAABB ABBBAAABABAAABBBABAABAAAAAABBAAABAABBAB

*ABG476 AAAAAABABAABBAABAABBBBBAAAAAABAABABABBBABBBAABAABAAAABB ABBBAAABABBBBA-AABBBAAAABAAAABBBABAAAAABAAABABABABBAAAAB BBBBAAAAAAABAABABBABBABAABBABBAABAAABBA

*WG464 AAAABABABB--BABBBABABABAA-BAAAABBABBBBAAABBBBBBBBBAABAB ABBBBAAABABBAAABAAA-AABBAAAAAABBAAABABBAAB-B-BAABABAAB-A AABBBAAABA-ABABAABB-AAAABAABAB-BBBBBAAB

*WG996 BAABABAAA---ABABABAABAAAABBAABBBAABABAABBBBAAAABABAAAAB ABAABABBABA-ABBBBBABAABABAAABBABA-BAABABABBBA-ABBBBAAAAB ABAAAAAAABAAAAAABABBABAABAABAAABABBAAAB

*WG223b ABBBABBAAABBBBBAABABBBBBBABBABAABBBAABABBAAAAAABAAAABBA BBBAABA-BBAAABBABBAAAABBABAAABAAABBBAABBAABBBAAAABBAAAAB ABBBAAAAAAABBABBBAAAABABBAABBABAABAAABB

*WG645 AAABBAABAABB-BBBABBABBAABAAAAABA-BAAAAAAAAABBAAABBABAAB BBABAABAAAAAAAAAABA-ABA-BAABBAABA-BBABAABBBBB-AAAAA-AAA- BAAABAAABBBBBBAABBBA-A-AA-BB-AAB-AAABBA

*CDO484 ABAAAABB---B-BBABBBBAAABBBAABBAABBAAABBABABBBABABBAAABB AABBAAABAAABBBBBABABAA-BBBABAAABABBABBBAAABABBBBBBABBB-A BAA-BAABABABAAABBBBBBBBBBAAAAABAAABABBA

*WG908 BBBAAAABBABBBABABBBBAAABBBAAAABBBBBAAABBBAAABABABBAAABB ABABAAAAAABABBABBAABABBBBAABABBBABABBBBBAAAABBAABAABBABB ABBBBBBBABABAABBAAABABABAABAAABBAABBBBA

*Chi1 ABBBBAABA--B-AB-AA--BBBBBBBAABBABABBABBBBBBBBBBABBABBAB BBBBAAAABBAABAABAAAAAABBBBAAAABAABAABBBBBAABAAAAABAABB-A BBBAAAAABBBBABABAAAAABBABBBBBAAABBAABA-

*Glb3 AABBAAAABB-ABBBABBAABAAAABAAAAAABBBBAAABBABABABBABABABB BAAABBBBABBABAAAAABABB-BBB-AAAAB-BAABABAABBBBBBBABAABBBA BBAABBBAABBBBABBBABAABBBAAABBBBAABABAAB

*Glb4 AABBAAAABB-ABBBABBAABAAAABAAAAAABBBBAAABBABABABBABABABB BAAABBBBABBABAAAAABABB-BBB-AAAAB-BAABBBAABBBBBBBABAABBBA BBAABBBAABBBBABBBABAABBBAAABBBBAABABAAB

*ABC309 ABAAAABBAABB-BAAB-BBABABBBAABBAABBAAABBABABBBBBABAAABBA AABBAAABAAABBBBBABABAABBBBABAAABABBABBBBAABABBBBBBAABBBA BAABAAABABABAAABBBBBABBBBAAAAABAAABABB-

*BCD402B A-A-AA--BB-B--BBBBBBBAA-BABAABABBA-BBABBABBBABBBBBBABAA ABABBBABAABBBAABABABAB--AA-AA-ABAAABABBAABABABAABBBAABB- A-BBBAA-BAABAABAABAAAABBBABBABABABAAAA-

*CDO504 B-BAAAAB-ABAB-AB----AAABBBAAAABBBBBAAABBBAAABAAAABAAABB ABABAAABAABABAABBAABABBBBAABABBBABABBBABAAABBBAABAABBABB ABBABBBBABABAABBAAABABABAABAAABBBABBABA

*CDO669 AAABAAAA--A-BBBBB---AAAA---BABABBAABAAABABBABBBB--BAAAA ABABBBABAABAAABBABA-ABBBBABAAAABAAABABBAAAABABAAABBAABBA AABBAAAABBABAABAABAAAABABABAABABABAAAA-

*Adh4 A-AAAABA--A-BBBBB-BABABAA-BAAAABBABBBBBAABBBABBBABBABAB ABABBAAABABBAAABAAABAAABAAAAAAABAAABABBAABABBBAABABAABA A AABBBA-ABAAAAABAABBAA-BBBBBBABABBBBBAAB

*Adh5 B-BAAB-B--A-AABAB---BBABB--ABBBABBABBBABBBBABABBBAAAAAA BABABBBAAABBABABB-AABABAAAAABA-BABABABB-BAAB-BAABBBBABAB ABABAA-ABBB-BBBBBBBBBAAABABAAA-ABABABBB

*Adh6 B--BAABB--ABAAA-A---AABBAB-ABAABBBAABAAABBBBBAAAABAAAAA AA--BAABBAAABABBABBBABBABBBBBBBBBAAAABAABBAA-ABAAAABAABB ABBBAA-BABAA-BBBABAAB-AA-AABBABABAABBAB

*Adh7 A-AA-ABA--ABBABAA---BB-AAA-AABAABABABBBABBBAABAABAAAABB ABBBAAABABBBBAB-AB-BAAAABAAAABBBABAAAAABAAAB-BABABBAAAAB BBBBAA-AAAABAABABBABB-BAABBA-BA-BAAABBA

*Adh8 BAABABBA--ABAABAAABAAAABBBBAAABBAAAABABBBBBAAAAAABAAAAB ABABAABAABABABBBAAABAABAAAAABBABABBBABABABBBABBBBBBAAAAB ABAAAAABABAAABAABBBBABAABBAAAAABABBAAAA

*Hor5 ABABBABA-BAB-BBAABA-ABABBAAABBAAAAABAABABBAABABBAAAABAA BABABABBBAAAAABBBBABAB--BA-ABABBAABBBBBBABBBABABABBBBBAA ABBBAA-BBABAA-BBABAAAAAAAABABAA-BAABBAA

*WG364 BABAAAABBABABAAABBBBAAABABBAAAABABAABABBAAAAABAAABAAAAA AAABABBBBAAAAAABAAABABABBBABABBBBAABABABAAABBBBBAABBBABB ABBA-AAAAAAABBBBABAABAAAABABBBABBBBBAAA

*ABR313 -ABBA-BBAABBBA-BBABBAABBABBABBBABAABA-AABABBBAAAABABAAA ABAAB-BBBABABAABABBAABBABBAABAAB-A-BBAB-BB-B-A-ABAABAABB AAABBBBBB-ABBBBAABBABAAB-ABBA-BABAABB--

*Glb1 BAAAAABAABBBABBAAAAAABBABAABABABABBBBBBBABBAAAAABABBBAB BABABBABBBBBABBBABBBBBBAAAABAABAABABABBABBABBBAAABBABBAA AAABBBBBABAABABBBBBBBBBBAAAABBBABBAABAB

*Tha ABBB-AABABABBABBAABBBBBBBBBAABBABABBABBBBBBBBBBABBABBAB BBBBAAAABBAABAABAAAAAABBBBAAAABAABAABBBBBAABAAAAABAABBA ABBBAAAAABBBBABABAAAAABBABBBBBAAABBAABAB

*Pox BAABABBAABAB-BABB-BAAAABBBBAAABBAAAABABBBBBAAAAABBAAAAB ABBBAABAABABABBBAAABAABAAAAABBABABBBABABABBBBBBBBBBAAAA BABAAAAAAABAAABAABBBBABAABBAAAAABABBAAAA

*ABC482 ABAAAAABAAB--BBABBBBAAABBBAABBBABBBAAABBBABBBABABBAAABB AAABAAABAABABBBBABA-AAB-BAABAABBABABBBBBA-BABBAB-AABBA-A BBABBAABABABAAABBBA-ABBBBAAAAABBAABABBA

*ABC483 BABBAABBAABBBAAABABBAABBABBABBBABAABAAAABABBBA-AABABAAA ABAABABBBABABAABABB-ABB-BBAA-AABBA-ABABBBAABBAAABAABAABB AAABABBBBAABBBBAABBABAABA-BBABBABAABBAA

*ABG484 AAAAAABABBAABABBBABABABAAABAAAABBABBBBBAABBBAB-BABBABAB ABABBAAA-ABBAAABAAABAAA-AAAAAAABAA-BABBAABABBBAABABAABAA AABBBAAABAABAABAABBAAABBBBBBABABB-BBAAB

*ABC151 ABBBBBBABBAAAAAABABAAAABAAAAABAAABBBBABAB-AAABBBBABAAAA BBABBABBABBBBABBBBABBAB-AABBABAAABBAAABAAAAAABAAAAABBAAA BBBAABBABBBBAABAABBABABBBBBBBAABABBBBBB

*ABC152A ABBBAABBABBABBBBBBABAABBAABBBBBAABBAAAABABABBAABBABBAAA ABAAABAABBAABABBBBAAABBBBAAAAAAAAAABABBBAABBBAAAAAAABBA B ABBAABBBABABBABBABBAABBBBBBBAAAAABBABAA

*ABC152B BAAAAABABBABABBAABAAA-BABAABABABABBBBBBBABBAAAAABABBBBB BABABAAABBBBABBBABBBBBBAAAABAABAABABABBABBBBBAAAABBABBAA AAABBBBBABAAAABBBABBBBBBAAABBBBABBBABAB

*ABC152D AA-BABAABBABABABABAAAAABBBBAABBBAAAABABBBBBAAAABABAAAAB BBBABABBABABBBABBBABBABABAAABABBABBABBABABBBA AAABBBAAAABABAAAAAAABBBABABBABAABAAABAAAAAAABBAAAB

*ABC153 AAABABABAABBABBBABBABBABBBAAAABABBAAAAABA-ABBAAAABBBAAB BBABAABBAAAAAAAABBAABAAABAABBAABAABBABAABBBBBBABAAAAABA A AAAABAAABBBBBBAABBBAAAAAAABBBAABBAAABBB

*ABC154A ABBABBBABBABABABAABABBABAAAABBAABBBBBABAB-AAABBABAAAAAB BBABBABBABBBAABABBABBABAAABBABBBABBAAABAAAAABBABABBBBAAB BBBBAAAAABBBAABAABBABABBBBBBBBABBBBBBBB

*Plc BBBBBBAABBAAAABABABABABAABAAABAAAABBBBBBBAAAABBBBABBAAA ABABBABBABBBBBBBBBAAABABAABBABAAABBAABBABAAAABAABAABBBA ABBBAABBAABBBAABAABBABBBBBBAABAABAABBABB

*BCD410 AAABBAABAABBABBBABBABBAABAAAAABABBAAAAAAAAABBA-ABBABAAB BBABAABAAAAAAAAAABAAABA-BAABBAABABBBABAABBBBBBAAAAABAAAA BAAABAAABBBBBBAABBBABABAABBBBAABBAAAB--

*WG114 ABAABABAAAAB-AABBAAAABBAB-AABAAABABBBBAABBBBBAABBAABBBB AABBBABAAAB-AA-BAAA-AAA-ABAAAAAABA-AAABAABBAB-BAABAABAAA AAAAAAABAA-ABABAAAAABAAAAAABABABBBABAAA

*His4A B-AAA----BB-AB--A-A-AABABAABAAABBBBABBBBABAABAAABABABAB BABABBABAABBABABAABBBBBABABBAABB-BABABBAABAABBABAABABAAA BAA--A-BABAA--BABBBBBAABAAAAABBABAAABAA

*Dor4A -BBAABB-ABA----A-BABBBABBABABBBABBABBBABBBBABA-BBAAAAAA -A-ABBBAAAB-ABA-BBAABABAAAAABAA-A-ABABBAB--B---A-BB-A-AB ABABAA-ABBBAB-BB-BBBB-AABABAA--ABABABB-

*Dor4B A-BBB--B--A-BBB-A-BBBBBBB--AABBABABBABBBBBBBBBB-BBABBAB B-BBAAAABBAABAABAAAAAABBBB-AAABAABAABBBBBAABAAAAABAABBAA BBBAAA-ABB-BABABAAAAA-BABBBBBAAA-BAABAB

*ABG20 ABBBABBAAABBBBAAABABBBBBBABBABAABBBAABABBAAAAAABAAAABBA BBBAABAABBAABBBABBAAAABBABAAABAAABBBAABBAABBBAAAABBAAAAB ABBBAAABAAABBABBBAAAABABBBABBABAABAAABB

*Dor2 BAAAAABAABBB-BBAAAAAABBABAABABABABBBBBBBABBAAAAABABBBAB BABABBABBBBBABBBABBBBB-AAAABAABAABABABBABBABBBAAAB-ABBAA AAA-BBBBABAABABBBBBBBBBBAAAABBBABBAABA-

*WG889 B-BBAAAB--BBAAAAA---AABAABBAAAABBBAABAAABBBBBBAAAAAABAA ABAAABABBAAAABBAABAAABBAABBBABBBBAAAABAAABAABABBAAAAAAB B ABBBBAABABAAABBBABAABAAAAAABBBABBABBBAB

*WG110 AAABAA-A-BB-BAABB---AAAAAABAAABBBBABAAABBBBABAAAABABABB BAAABBBBAAAABAAAAABABBBBBBBBBAABBBAABBBAABBB-BBBABAAABBA BBAABBBAABAABABBBAAAABBBAAABBABAABBBAAB

*ABC155 ABAAAAABAABBBABABBBBAAABBBAABBBABBBAAABBBAABBABABBAAABB AAABAAA-AABABBBBABABABBBBAABAABBABABBBBBAABABBAABAABBABA ABBBBAABABABAABBBBABAB-BBABAAABBAABBBBA

*ABC156A BAABABAABBAABBABBABBAABBBBBABABBBAAAAABBBBBBAABABBAAAAB ABBBAAB-ABABABBAAAABBAB-AABABAABAABAABABBABB-ABBBBAABAAA ABAAAAAAABAAABAABBBAABAABAAAAAABABBABAA

*ABC156C BBBAABBBABAAAABABBABBBABBABABBBABBABBBABBBBABABBBAAAAAA BABABBBBAABBABABBBAABABAAAAABAABABABABBABAABABAABBBBABAB ABABAAAABBBABBBBBBBBBAAABABAAABABABABBB

*ABC156d ABAABBBABAABABABAABABBABAAAABBAABABABBBABBAAABBABAAAABB ABABBABBABBBBABABBABAABABABAABBBABBAAABBAAABBBABABBBBAAB BBBBAAAAAAABAABAABBBBABBBBBBBBABBAAABBA

*CDO57B BABAAAABBABA-AAABBBBAABBABBAAAABABAABAABAAAAAB-AAAAABAA ABABABBBBAAAAB-BAAAAABBBABABABBBBAABABABAAAABBBBAAABBABB ABBABAABAAAABBBBABAABAAABAABBBABBABBAAA

*CDO537 BAABABAAAB-B-BABAAAABAAAABBAAABBAABABAABBBBAAA-BABAAAAB ABAABABBABABABBBBAABAAB-AAAABBABABBBABABABBBAB-BB-BAAAAB ABAAAAAAAB-AA-AABABBABAABAAB---BABBAAAA

*BCD453B AAAABAAABBABBAABBABAAABAAABAAAABBABBBBAAABBBBA-BBAAABBB ABBBBAAABABBAABBAAABAAB-AAAAAABBAA-BABBAABAABBBABABAABAA AAAABAABBAAABABAAABAAAAABAABABABBBBBAAA

*CDO64 BAABABBABBABABABBABAAAABBBBAAABBAAAAAABBBBBBAA-ABBAAAAB ABBBAABAABA-ABBBAAA-BABAAAAABB-BAA-BABABBABBBABB-BBABAAB ABAAAAAAABAAABAABBBAABAABBAAAAABABBAAAA

*CDO588 AAABABAABBAB-BABABAAAAAAABBAABBBAAAABAABBBBAAAABABAAAAB ABAABABBABABBBABBBA-BAB-BAAABAABABBAABABABBBABAABBBAAAAB ABAAAAAAAB-BAAABBABBABAAAAAAAAABABBA-AB

*ABG4 AAABAAABBBBABAABBBABAAAAAABAAABBBBABABABBBBABAAAABABABB BAAABBBBAAAABAABAABABBBABBBBBAABABAABBBAABBBABBBABAAABBA BAAABBBAABAABBBBBAAAABBBAAABBABAABBBAAB

*ABC157 AAABABABAABBABBBABBABAABBBAAABBABBAAAAABA-BBAAAAABBBAAB BBABAABBAAAAAAAAABAABAAABAABBABBAABBABAABBBBBBABAAAAABA A AAAABAABBBBBBBAABBBAAAAAAAABBAABBAAABBB

*ABC158 ABBABBBABBABABAAAABAAAABAAAABBAAABBBBABAB-AAABBABAAAAAA BBABBABBABBBAABABBABBABAAABBABBBABBAAABAAAAABBABAABBBAAA BBBBAAAABBBBAABAABBABABBBBBBBBABABBBBBB

*ABC160 BAAAAABAABBBABBBAAAAAABABAABABABABBBBBBBABAABAAABABABAB BABABBA-BBBBABABABBBBBBAAAABAABBABABABBABBABBBAAABBABBAA BAAABBBBABAABABABBBBBB-BA-AAABBABAAABAB

*Nir AABBAA-AAAA-BAA-A-A-BBB-BA-AB-AAB--ABBAAAABABABBB-AABAB BBB-ABAAAAABBBBABBABABBBABAAABAAAABBAABBABBA-ABABBBAAAA BABBAABBABAAABABBABAAA-BBBBBBBABBABBAABB

*Aga7 AABBBBAA-----BABBBBBABBBBABBAAAAAABBBBABAAAABAABBAAABAB AABABBBAAABAAAABBAABBB-B---BAAABABABABBBAABAB-BABBBABA-A BBAABBBBAABAA-BAB-BBAAAABAAAABB-AAAAAA-

*ABR303 -BBBBBAABBAAAABABABABABAABAAABAAAABBB-BABAAAABBBB-BBAAA ABABBABBABBBBBBBBBABBBABAA-BABAA-B-AABAABAAAABAABAABBBAA BBBAABBABBBBAABAABBABABBBBABBAABABBBAB-

*ABR329 -AA-AABABAABBABAAABBBBBAAAAAABAABABAB-BABBBAABAABAAAABB ABBBAA-BABBBBABAA--BAAAABAAA-BBB-B-AAAABAAABABABABBAAAABBB BBAAAAAAABAABABBABBABAABBABBAABAAAB--

*ABG378 A-BBAABBA-BABBBBB---AABAABABBABAABBAAABBABABBAABBBBBAAA ABABABABBBAABABABBAAABBB-A-AAABA-AABABABA-BBAA-AAA-ABBAB ABBAA---ABABBBBBABBAAABBBBBBAAAAA-BABAA

*ABG379 ABBBAABAAAABBBAAA-ABBABBBABBBBAABBBAABAABAAAAAABBAAABBA BBBAABAABBAABBBABBABABBBABAAABABABBBAABBAABABABABBBAAAAB ABBAAAAAAAABBABBBBAAABABBBABBABAABAAABB

*ABG380 ABBBBBBABBABAAA-B-B-AAABAAAABBAAABBBBABABAAAABB-BAAAAAA BBABBABBABBBAABBBBABBABAAA-BABBBABBAAABAAAAABBAAAA ABBAA ABBBA ABBAB BBBA- BAABB ABABB BBBBB AABAB BBBBB

*ABC161 AAABAAAABBAABBAABBAAAAAAAABAAAABBBABAAABBBBABAAAABABABB BAAABBBBAABA-AAAAABABBBBBBBBBAABBBAABBBAABBBABBBABAAABBA BBAABBBAABABBABBBAAAAB-BAAABBBBAABBBAAB

*ABC162 BAABABA-ABABABABABAABAAAABBAABBBAABABAABBBBAAA-BAB----- ABAABABBABABABBBBBABAABABAAABBABABBAABABABBBABABBBBAAAA BABAAAAAAABAAAAABBABBAB-ABBABABABABBAAAB

*ABC163 ABBBAABAAAABBBBAABABBABBBABBBBAABBBAABAABAAAAAABBAA---A BBBAABAABBAABBBABBABABBBABAAABABABBBAABBAABABABABBBAAAAB ABBAAAAAAAABBABBBBAAAB-BBBABBABAABAAABB

*Prx1B --------------------BAAAA-AAAAAAA-BBAAABBABABABBBBAB ABBBABABBBBABBAAABAAABABB---B-ABAAB-B-BBAAAAB-AB-BBAB-A- B--BB---B-AAA-BB--BB-BAABBBAAA-B----B-BA--

*WG834 A-B-BBB------AA------AABA-AAABAAABBBBABABAAAABBABABAAAA BBABBABBABBBAABBBBABB--------BAA-B-AAAB-A--AAB-AAAAB-AA ABBBAAB-ABB-BA--AABBABABBBBBBBAA-ABBBB--

*WG380A A-B-BAB-------A-A----BBBBAB--BBABABBABBBBBABBBBABAABB-B BABBBAABABBBBAABAAAAAA-------ABBAB--BAA-B-AAABAABBAABAAA BBBA-AAAABBBA-BBAAABBBBABBBBB-A-BBAAB--

*CDO474c -------------------------BBAABBBAAAABABBBBBAAAABA-- ------------------------BABABAAABAABABBAABABABBBA-AA BBBAAAABABAAAAAAABABA-ABBABBABAAABAAAAAAABBAA--

*CDO113B --ABA-------BAABB-----BB---A-ABABBABABABABBABBBBBAABAAB BAAABBABAAAABAABABB-BBBAAAABBA-BABAABBB-BABA-BAAABBAABB ABAAAAAABABA-BBBABAAA-B------------BA---

*His4B ---------------------------A-ABB--ABAB--A-BABAAAABA BAABB-A-BBBBA-AABA--ABBABBBA--ABB-A-AB-A----BABAAB-A---- AB-------B-AAB-AB--BBAAAB-BABAABBABAAB-BABB

*CDO105B BAAAAAB------BB------------BABABABBBBBBBABBAAAAA-ABBBB BBABABBABBBBBABBBAB---------------------------B-A-B BABBAAAAAB-B-BAB-A---BBBBBB-BBAAAABBB-B-AA---

*ABG313A ABABAAAABBBAB-AB-ABB-ABBB-BABBBBBABBABBBBAABAABABAAABAA ABBABBBAABAAABBAAAAABABBAA-ABABBAAB-------ABBABBBAA-ABB -BAA--A-AAA-BAAABBBBAABAAAAAAA-ABAA--BAA

*ABC310A ABAAAAAB-ABBABABB-BBAAABBB-ABBAABBBAAABABABBBABABBAAABB AABBAAABAAABBBB-ABABAABBBBABAABBABAABBBBAABA--BBBAABB-BA BBABBAABABABA-ABBBABA-BBBAAAAABAAABABBA

*ABC310b AABBBABA-BA-BABAA-BBBBBAAABBABAABABAABBABBBBBBBABAAAABB AABBBAABABBBB-ABABBABAAABBAAABBBABAAAAAABAA--BABBBB-A-BA BBBAB-AAA-ABA-BBAAABB--A-BABBA-ABAAABA-

*ABC164 BAAAAABABBABABBAABAAABBABAABABABABBBBBBBABBAAAAABABBBBB BABBBAAABBBBABBBABBBBBBAAAABAABAABABABBABBBBBAAAABBABBAA AAABBBBBABAAAABBBABBBBBAAAABBBBABBBABA-

*ABC165 AAABABABAABBABBBABBABBABBBAAAABABBAAAAABAAABBAAAABBBAAB BBABAABBAAAAAAAABBAABAAABAABBAABAABBABAABBBBBBABAAAAABA A AAAABAAABBBBBBAABBBAAA-AAABBBBABBAAABBB

*ABC166 AABBAAAABBABABBABBAABAAAABAAAAAAABBBAAABBABABABBBBA---B BABABBBBABBAAABAAABABBBBBBBABAABBBABBAAAABBBBABBABAABBBA BBAABBBAAABBBBBBBABAAB-BAAABBBAAABABAAB

*ABG494 BAAAAABABBABABBAABAAABBABAABABABABBBBBBBABBAAA-ABABBBBB BABABAABBBBBABBBABB-BBBAAAABAABAABABABBABBBBBAAAABBAB--- AAABBBBBABAAAABBBABBBBBBAAABBBBABBBABAB

*ABG495A BBBAAAABBA-B--BABBBBAAABBBA--BBABBBAAABBBAABBA-ABBAAABB AB-BAAABAAB-BBBBBBABABB-BAAB-BBBAB-BBBBBAABABBAAB---BABA ABBBBBBBABABAABBABABABBBBBBAAABBAABBBBA

*ABG495B AABBAAAABB---BBABBAABAAAABAAAAAABBBBAAABBABABA-BABABABB BA-ABBBBABBABAAAAABABBB-BBBABAABBB-BBAAAABBBBBBBA---BBBA BBAABBBAAABBBBBBBAB-ABBBAAABBBBAABABAAB

*ABG313B A-AB-AA-BBABBABBBAAA-AAABBABABABBAABAAABABBABBBABBBAAAA ABAABBABAABAAABBABAAABBBBABAAAABBBABABBAAAABABA-ABBAABBA A ABBAAAABBABA-BAABAAAABABAAAABABABAAAA-

*Act8 ABABBABA-BAB-BBAABBBABABBAAABBAAAAABAABABBAABABBAAAABAA BABABABBBAAAAABBBBABAB-ABA-ABABBAABBBBBBABBBABABABBBBBAA ABBBAAABBABAABBBABAAAAAAAABABAA-BAABBAA

*Cat3 ABBBBAABABABBABBAABBBBBBBBBAABBABABBABBBBBBBBBBABBABBAB BBBBAAAABBAABAABAAAAAABBBBAAAABAABAABBBBBAABAAAAABAABBA A BBBAAAAABBBBABABAAAAABBABBBBBAAABBAABAB

*ABA001 BABBAAABBABBA-A-AABAAABAABBABAAB-BAABAAABBBBBAAAAAAABAA ABAAAAABBAAAABBAABABABBAABBBABBBB-AAABAAABAABABBAAAAAABB ABBBBAABAB--ABBBAB-ABAAA-AABBBAB-AABBAB

*ABA002 AABBBBAAAAA-A-A-BABBABBBBABBAAAAAABBBBBBAAAABA-ABAAAAAB AABABBBAAABAAAABBAABBBABBABBAAABABABABBBAABABBBABBBABABA BBAABBBBAABBAABABABBAAAABAAAABBAAAAAAAA

*ABA004 BBABAABABBABB-B-ABBBABBBBAABBBAB-AABABBBABAABABB-ABABBB BABBBABBBAABAABBBBBBBBBABABBAABBA-ABBBBBABBBA--BABBB-B-A ABB-----AA-AAB------B-A---BABABB--BBB-A

*ABA005 AAABBAABAABBA-A--BBABBAABAAAAABABBAAAAAAAAABBAAABBABAAA BBABABBAAAAAAAAAABAAABAABAABBAABA-BBBBAABBBBBAAAAAABAAAA BAAABAAABBBBBBAABBBABABA-AB-BAAB----BBA

*ABA003 AAAAAABABBAABABBBABABABAAABAAA-BBABBBBBAABB-ABBBABBABAB ABABBAAABABBAAABAAABAAABAAAAAAABA-ABA-BAABABBBAABABAABAA AABBBAAA-AAAAABAABBAAABBBBBBABAB-BBBABA

*ABA006 AB-BA--AA---BB--ABAB-BBBB-BBABAABBBAABABBAAAAAA-AAAABBA ABBAABAABBAABBBABBAAAABBABA-------BBAA--AABBBAAAABBAAAAB ABBBAAABAAABBA--B-AAA-ABBBABBABAABAAAB-

*ABG002 BAAB-BBABBABABABBABBAABBBBBAAABBBAAAAABBB--BAABABB----- ---------------B-A-BBABBAAAABBABAABBABA-BABBBABBBBA-B AABABAAAAAAABAAABAABBBAABAABAAAAAABABBABAA

*ABG003 AAABAAAABBAABA-BBBBA-A-AAABA-AABB-BBBBBAABBBABB-ABBABAB ABABBAAABABBBAABAAABAAABAAAAAAAB-AABABB-ABABABAABA-AABAA AABBBA-ABA-AAABAABBAA-BBBBBBABAB-BBA-A-

*ABG014 A--BA---BBABABABABAAA-AAABBAABBBAAA-BAABB-BAA-ABA-AAA-B ABAABABBABABBBABB-A-BABABAAABAABA-BAABABABBBABAABBBAAAAB ABAAAAAAABABAA-BB--BA-AA-BA-A--BABBA-AB

*ABR320 -BABAABBABBABBABBBABAABBAABABABAB-ABA-BBABBABAAAABAAAAB AA-A-BABAAABAAABBBAABBBA-AABBAAB-B-ABBBABABAABAAB-BBAABB BAAAA--BABAABBBABAAABBBABABB-ABABABA-B-

*ABR331 -BBBABBAABBABBAAABABBBBBBABBABAABBBAA-ABB-AAAAABAAAABBA ABB-A-AABBAABBBABBA-AABBAA-AABAA-B-BAA-BAA--BAAAABBAAAAB ABBBAA-BAAABBABBBAAAABABBBB--A-AAB-AAB-

*ABC167a ABBBBBBABBAAABAABABAAAABAAAABBAAABBBBABABAAAABBABAA---A BBABBABBABBBAABBBBABBABAAABBABBAABBAAABAAAAAABAAAAABBAAA BBBAABBABBBBAABAABBABA-BBBBBBAABABBBBBB

*ABC167B BAABABAAABABABABABAABAAAABBAABBBAABABAABBBBAAAABABAAAAB ABAABABBABABABBBBBABAA-ABAAABBABABBAABABABBBABAABBBAAAAB ABAAAAAAABAAAAABBABBAB-ABBABABABABBAAAB

*ABC168 BABAAAABBABABAAABBBBAAABABBAAAABABAABAABAAAAABAAABAAAAA ABABABBBBAAAAAABAAAAABBBABABABBBBAABABABAAABBBBBAABBBABB ABBABAABAAAABBBBABAABAAAABABBBABBABBAAA

*ABC169A ABBBBBBABBAAABAABABAAAABAAAAABAAABBBBABABAAAABBABABAAAA BBABBABBABBBAABBBBABBABAAABBABAAABBAAABAAAAAABAAAAABBAAA BBBAABBABBBBAABAABBABABBBBBBBAABABBBBBB

*ABC169B ABBBBBBAAABABBBAABABBBBBBABBABAABBBAABABBAAAAAABAAAABBA ABBAABAABBAABBBABBAAAABBABAAABAAABBBAABBAABBBAAAABBAAAAB ABBBAAABAAABBABBBAAAABABBBABBBBAABAAABB

*Ubi2 BAABAABBAAABAAAAAABAAABBABAABAABBBAABAAABBBBBAAAABAABAA AAAAAAABBAAAAABAABABABBAABBBBBBBBAAAABAAABAABABBAAAAAAB B ABBBAAABABAAABBBABAABAAAAAABBAAABAABBAB

*Ubi4 A-B-B-B----A-BBAA---BBBBBA-BABAA-BBAABABBAAAAAABAAAABBA ABBAABAABBAABBBABBAAAA--AAAAABAAABBBAABBAABBBAAAAB-AA-AB ABBBAAA-AAABB-BBB-AAABABBB-BBABAABBAAB-

*dRpg1 BBBBBBAABBAAAABABABABABAABAAABAAAABBBBBBBAAAABBBBABBAAA ABABBABBABBBBBBBBBAAABABAABBABAAABBAABBABAAAABAABAABBBAA BBBAABBAABBBAABAABBABABBBBAABAABAABBABB

*ABC170A AABBAAAABAABBBAAAABABBAABBBABAABABBABAAAAABABAABBAAABAB BBBBABAAAAABABBABBBBABBBBBAAAAAAAAABAABBABBBAABABBBBBAAB ABBAABBABAAABABBABAAABBBBBBBAABBAABAABB

*ABC170B ABBBAAAAAAABBBBAAAABBABBBABBBBAABBBAABAAAAAAAAABBAAABAA BBBAABAABBAABBBABBABABBBABAAABABABBBABBBAABABABABBBAAAAB ABBAAAAAAAAABA-BBBAAABBBBBABBABAABAAABB

*ABC171 AAAABABAABAAABABAAABBABAAABBBBABBBBBABABBBBABABBAAABAAB AABBABB--AAB-BBABBAABBABAAABBBABBBAAABBABAAABBAABBBBAAAA BBBBBAAABBBABBBBBABB-A-BB-BAAAABBABAABA

*ABC172 BABBBAAABBABABBABAAABBAAABAAAABAABBAAAABBABBAABBBBABBBB BABBBBBBABBAAABAAABABBABBBBABA-BBBBBABAAABBABABBABAABBBA BBAABBBAAABBBBBBBABAABBBAAAABAAAABABAAB

*Aga6 ---BB-----A-BB--A---ABA----A-B-AB--B-A----AA---------- ---------------------ABAABA-ABABB-ABBBBB-ABBB-BABAB BBB-AAABBBAAABBABAA-BBABAAAAAAAABABAABBAAB---

*ABR334 BBBAABBBABAAA---BBABBBABBABABBBA-B-BBBABBBBABABBBA-AAAA BABA-BBAAABB---BB-AABABAAAAABAABABABABBABAA-ABAAA-BBABAB AB--AAAABBBABBBBBBBBBAAA--B-AABABABABBB

*ABR335 -BBBABBAAABBBBBAABABBBBBBABBABA-BBBA-BABBAAAAAAB-A-ABBA BBBA-BAABBAA-BBABBAA-ABB-BAAABAAABBBAABBAAB-B-AAABBAAAAB AB-BAAABAAA-BABBBAA-ABABBB-BBABAABAAABB

*ABR336 -AABAABBAAABA---AABAAABB-BAABAABBB-ABAAABBBBBAAAABAAAAA AAAA-AABBAA-BABAABBBAABABBBBBBBBBAAAABAABBA-BABAAAABAABB ABBBAAABABAAABBBABAABAAA-A--BAAAB-ABBAB

*CDO474B -------------------------BBAAABBAABABABBBBBAAAAB-B- ------------------------AA-AAAAABBABABBAABABABBBABAB BBBAAAABABAAAAAAABA-A-A-BABBABAABBABAAA-ABBAA--

*ABG496 ABAAAAABAABBBABABBBBAAABBBAABBBABBBAAABBBAABBA-ABBAA--B ---BAAABAABABBBBABA-ABB-BAABAABBABABBBBBAABABBAABAABBA-A ABBBBAABABABAABBBBABABBBBBBAAABBAABBBBA

*ABG497 BAABAABBAAABAAAAAABAAABBABAABAABBBAABAAABBBBBAAAABAAAAA AA-AAAABBAAABA-AABB-ABBABBBBBBBBBA-AABAABBAABABBAAABAABB ABBBAAABABAAABBBABAABAAAAAAB-AAAB-ABB--

*ABG387a AABBB BAABA -BBBB BB-B- ABBB- ABBAA AABAB BBBAB AAAAB AABBA AABAB BABAB BBAAA BAAAA BBAAB BBABB BA--A A-ABAB-B-B AABA- A-A-B BAB-B AB-AA B-BAA AB-AA BABAB BAAA- BAA-ABAAAA -AAAA

*ABG387b ABBBBBBAABB-BBBBABABBABB- ABBBB AABBB ABAABABABA AABBA BBBBA ABAAA BAABB AABBB ABBAA ABBBA AA--AA-ABB B-ABB A-BB- A-A-B BAABA BA-BB A--BA BABBA BBBBA AAB-BBBB-B ABAAB -ABBB

*ABG388 A-BBA ABAA- A-BBA AABA- BABBB --BBB AABBB AABAABAAAA AABBA AABBA BBB-A BAABB AABBB ABBAB ABBB- --AAB AB-BBBAABB AABAB A-ABB -AAAA BABBA A---A AABBA BBBBA AABBB BBABB-B-AB -AABB

*ABG389 AAABA AAABB -AB-- ABBAA AAAAA ABAAA BBAB- BAAABBBBAB AAAAB ABABB BAAAB -BBAA BABAA AAABA BBBBB BBBBAA-BBA ABBBAABBBA BBBAB AAABB ABBAA BBB-A BAABA BBBAAAA-BB AAABB ABAABBBAAB

*ABG390 ABAAB AABAA BBABB ABBBB AAABB BAABB AABBB AAABABABBB ABABB AAABB AABBA AABAA ABBBB BABAB AABBB BABAABBABA ABBBB AABAB BBBBA ABBBB ABBAB BAABA BABAA ABBBABABBB BAAAA ABAAABABBA

*ABG391 ABAAA AABAA -BB-B ABBBB AAABB BAABB AABBB AAABABABBB ABABB AAABB AABBA -ABAA BABBB BABAB AABBB BA-AAB-ABA A-BBB AABAB BBBBA ABBBB ABBAB BAA-A BA-AA ABBBA BA-BBBAAAA ABAAA BABBA

*ABG001 ABBBAAAAAAABBBBAAAABBABBBABBBBAABBBAABAAA--AAAABBA----- ---------------------------------------------ABA BBB-AAAB-BBAAAAAAAAABABBBBA-ABBBBBABBABAABAAABB

*ABG005 BAABABBABBABABABBABAAAABBBBAAABBAAAAAABBBBBBAAAABBAAAAB ABBBA-BA---B-B-BA------A--AABBABA-BBA--BBBBB-BBBBBBAAAAB -BAAAAAAABAAABAABBB-ABAABBAAAAABABBAAAA

*ABG008 BAABBBAABBBABBABBABBAABBBBBABABBBAAAAABBBB-BAABABB-AAA- A------AABA--BBAAAAABABBA-BABAABA-BAA----ABBBABBBBA-BBAA -BAAABBAAAAAABABBBBAABAABAAAAAABAABBBAA

*ABG011 A--AAABAAA-ABA-AAABBBBB-AAAA-BAA--BABBBABBBAABAA----AB- AB-BAA-BABBB-ABAABABAAA--A-AABBBABAAAAA-AAABABABABB-AAAB BBBBAAAAAAABAABABBABBABAABBBBBABBAAABBA

*ABG019 -A---B------A---AAAA-AAAA---AABBAABABAABBBBAAAABA-AAA-B ABAABABBABABAB-BBAABAABAAAAABBABA-BBAB-BABBBABABBBBAAAAB ABAAAAAAABAAAAAABABBABAABBABAAABABBAAAA

*ABG022A AB-AA-B-BAABBBABAABBBBBAAAAABBAA--B-BBBABBBAABAAB-A---B ABBBAA-BABBB-A-----BAAAA-A-A-BB-A--A---------BABABB-AAA BBBBBAAAAAAABAABABBABBABAABBBBBABBAAABBA

*ABG022B BA-AB-B-BBBBABBAABAAABBABAABABAB--B-BBBBABBAAAAAB-BBB-B BABABAABBBBBABBBABBBBBBAAAABAABAA-ABABBABBBBBAAAABBABBAA AAABBBBBABAAAABBBABBBBBBAAABBBBABBBABAB

*Rrn5S1 AAABAB--BB-B-AAB-BA-AA-BBBBA-BBB--A-B-BBABBABAABABAAAAB BB-AB--BAA-BABABB-A-BABABAAABABBAB-----BBABBAAAABBB-AAAB AAA-AAA---BB-BABBABAABAAABAAAABA-BBAA--

*Crg3A AAAAAB---BAAABBAABAABAABBBBABBBBABAABABBABABAAABABABAAB BBABAABAAAABABABABABBAAABAABBABBAABBAAABBABBBBAAAAAAABAA AAAAAAABBBABABAABBBAAAAAABABBAAABAAAAAB

*Crg3B A---A-----B-BAABB---AAB-----AAB---ABAB---B-AAAAAABABAA- AAAABBABAAABBAABBBA--BB----BBA-B-BAABBB-BABAABAABBBAAAB BBAAAAAABABAABBBA--AABBBABABBABBABABAABB

*ABC174 AABBAAAABBAABBBABBAABAAAABAAAAABBBBBAAABBABABABAABABABB BAAABBBBABBABAAAAABABBBBBBBABAABBBAABBBAABBBBBBBABAABBBA BBAABBBAABBBBABBBABAAB-BAAABBBBAABBBAAB

*ABC175 ABBBAABAAAABBBBAAAABBABBBABBBBAABBBAABAABAAAAAABBAAABAA BBBAABAABBAABBBABBABABBBABAAABABABBBAABBAABABABABBBAAAAB ABBAAAAAAAABBABBBBAAABBBBBABBABAABAAABB

*ABC176 ABAAABBBABBBAABABBABAAABBABABBBABBABABBBABBABABBABAAAAA BABABBAAAABBABABBBAABBBAAAAABAABABABBBBABABBABAABBBBAAAB AAABAAABBBBABBBABABBBB-ABABAABBABABAABB

*ABG498 ABAABABAAAABBAABBAAAABBABBAABAAABABBBBAABBBBBA-BBAABBBB AABBBABAAAB-AA-BAAA-AAAAABAAAAAABABAAABAABBABBBAABAABAAA AAAAAAABAABABABAAAAABAAAAAABABABBBABAAA

*ABA303 ABAAAABAABAA-AABBAABBABBAABBBBAAABBAA-ABB-BAB-BBBABBAA- ABBB-BAA-AAB-BB-BBABBABBAAABABAAABAAABBA-AAABBAA--BBAAAB BBBBAAAABBB-BBB-AA-BA-BB-----A-BBABA-BA

*Dor5 BAABAA-B--ABAAAAA-B-AABBAB-ABAAABBAABAAABBBBBAAAABAAAAAAA AAAAABBAAABABAABBBABBABBBBBBBBBAAAABAABBAABABAAAABAABBAB B B AAABABAAABBBABAABAAAAAABBABABAABBAB

*Rrn5S2 AB-BA-B-ABBBBAAABBABAABBAABABABA--A-ABBBABBABABBA-AAAA- BABA-BA-------AB--AABBB-AAAABAABA-ABBB-ABABBA-AABBB-AAAB AAABAAABBBBABBBABABBBBAABABAAABABABAA-B

*ABA301 BBBBBBAABBAAAABABABABABAABAAABAAAABBBBBBBAAAABBBBABBAAA ABAB-ABBABBBBBBBBBAAABABAABBABAAABBAABBABAAAABAABAABBBAA BBBAABBAABBBAABAABBABBBBBBAABAABAABBABB

*ABC154B AAAAAABABBABBAABAABBBBBAAAAAABAABABABBBAB-BAABAABAAAABB ABBBAAAAABBBBABAABBBAAAABAAAABBBABAAAAAAAAABABABABBAAAB B BBBBAAAAAAABAABABBABBABAABBABBAABAAABBA

*ABG054 ABAABABAAAABBAABBAAAABBABBA-B-AABABBBBAABBBBBAABBAABBBB AABBBABAAABBAABBAAA-AAAAABAAAAAABABAAABAABBA-B-AABAABAAA AAAAAAABAABABABAAAAABA--ABAB-BABBBABAAA

*ABG058 -BABAAAABBBABBAB-ABBBABBBBBABBBBBABBAABBBAABAABABAAABAA ABBABBBAABAAABBAAAAABABBAABABAABAABAAAABAAABBABBBAABABBA BAAABAAAAABBAAABBBBAABAABAAAAAABAABBBAA

*ABG394 ABAAB ABAAA ABBAABBAAAABBAB BAABAAABABBBBAABBBBBAABBA ABBBB AABBBABAAABBAABBAAA- AAAAABAAAA AABABABABAAABAB BBAABAABAAAAAAAA-ABAABABA BAAAA ABAAA ABABABABBBABAAA

*ABG395 BAABAABB-AABAAAAA-BAAABBABAABAABBBAABAAABBBBBAAAABAAAAA AAAAAAABBAAABABAABBBABBAABBBBBBBBAAAABAABBAABABBAAABAABB ABBBAAABABAAABBBABAABAAAAAABBAAABAABBAB

*ABG396 BBB-A --BAB-AAAB-BBABBBBBB ABABBBAABBBBBABBBBABABBBAAAA-ABABABBBAAABBABABBBAAB-BA- -AABAAB-B-B-BBABAABA BAABB -BA-A BABABAA-ABBB-B-BBBBBBBAA-BABAAABABABB-BB

*ABG397 ABAAB ABAAA-BBAABBBAAABBAB BAABAAABABBBBAABBBBBAABBA ABBBBAABBB-BAAA-BAABBAAAB AAAAABAAAA A-BABABABAABBAB BBAABAAAAAABAAA AAABAABBBA BAAAAABABA ABABA BABBBABAAA

*BCD131 AABBA AAABB -AABB ABBAABABAA BAAAAABBBB-AAABBABABABAAB ABABB -AAABBBBABBABAAAAABA BBBBBBB--AA-BBAAABBAABBBBBBBABAABBBABBA-B-BAABBBBA BBBABA-BBBAAABBBBAABBBAAB

*ABG398 BBBAABBBAB-AAA-ABBABBBBBBA-ABBBAABABBBABBBBABABBBAAAAAA BABAB-BAAABBABABBBAAB-BAAAA-BAABABAB-BBABAABABAABB BBA-A BABABAAA-BBBABB BBBBBBB-AABABAAABABABABBB

*ABG399 BBBAABBBABAAAA--BBABBBBBBABABBBAABBBBBABBBBABABBBAAAAAA BABABBBAAA BBABA -BBAABABAAAAABAA-ABAB-BBABAABABAABBBBABABABABA-A-BBBABB BBBBBBBAAABABAA ABABA BABBB

*ABG499 ABABAABBABB--BAABBABAABBAABAAAB--BABABABABBABA-AABABAAB AAAABBABAAABBAABBBAABBB-AAABBAABABAABBBABABAABAABBBAAABB BAAAAAABABAABBBABAAABBBABBBBABBABABAABB

*ABG500a BAAAAABABBABABBAABAAABBABAABABABAABBBBBBABBABAABBABBBBB BABBBAABBBBBAA-BABB-BBBAAABBAABBAB-BABBABBBBBAABABBBBBAA ABABBBBBABAAAABBBABBBBBAA-BABBBABBBABAB

*ABG500b AAAABABAAAABBAABBAAAABBABBBABAA-BABBBBAABBBBBAABBAABBBB AABBBABAAABBAA-BAAA-AAAAABAAAAAABA-AAABAABBABBBAABAABAAA AAAAAAABAABABABAAAAAAAAAA-ABABABBBABAAA

*ABG701 A--ABA-A-A-B-BBAAABBBBBA-AAABBAA-AB-BBBAB-B-AB-ABAAAABB ABBBAAABABBBBA-ABBABAAA-BABAABBBAB-AAAABAAABABABA-A-AAAB BBBBA-AAAA-BAABABBABBAB-ABBBBBABBAAABBA

*ABR337 BAAABABABBBBABBAAAAAA-BA-AABAB-BABBBB-BB-BBAAAA-B-BBBBB BABA-AABBBBB-B-B-BBBBBBAAAABAABAABABABBABBBBBAAA-BBABBAA AA-BBBBBABA-A--BBBBB-BBBBAAABBBA--AA-A-

*ABR338 BAABABAAABABABABABAABAAAABBAAA-BAABABAABBBBAAAABABAAAAB ABAA-ABBABAB-BBB-BABAABABAAABBABABBAABABABBBABABABBAAAAB ABAAAAAAABAAAAAABABBABAABBABAAAB--BA-A-

*TubA1 ---BAA----A-BBBBB-B-BAAABABAAAABBABBBBBBABBBABBBABBABABAB ABBAABBABBBAABAAABABABAAAAAAABAAABABBAABABABAABABAABBAA AB B BAAABAAAAABAABBAAABBBBBBABABBBBAAAA

*WG622 AAABBAAABBAB-ABAAAAAAAABBBABBBABAAABAAABABBABBBABBAAAAA BBAABBABAABAABBBABA-ABB-BABBAAABB-ABABAAAAABA-AA-BBAAAB- --BBAAAABB-BAABAABAAAAAABAAAABABABAABBA

*ABG057 ABAABBBBABAAAABBBAABBABBBABBBBABBBBBABABBBBABABBBAAAAAB AABAABBAAAABABAABBA-BABBAAABBBABBBAAABBABAAABB-ABBBBABAB ABAB-AAABBBABBBBBABBAABBBBBAAABBBABAABA

*ABG702 AABBBBAAAAA--BABBABBABBBBAABAAAAAABBBABAAAAABA-ABABABAB AA-ABBBAAABAAAABBAABBBA-BABBAABBAB-BABBBAABABBBAABBABABA BBAABBBBABBBBABABABBAAAAB-AAABBAAAAAAAA

*ABG703A B-BAAB-BAB---ABABBABBBA-B-BABBBA-BABBBBBBBBABA-B-BAAAAA BABABBAAAAB-ABABBBA-BBB-AAAABAABA-ABBBBABAABA-AA--B-AAAB ABABAAABBB-ABBBBBBBBBAAABBBAAA-ABABA-BB

*ABG703b AAABAAAABBBABBABBABBBA-BBBBABBBBBABBAABBBAA-AABABAAABAB ABBBBBAAABAAABBAAAAABAB-AABABAABAABAAAABAABBBABBBAABABBA BAAABAAAAABBABABBBBAABAABAAAAAABAABBBAA

*ABG704 BBBBBBAABBAAAABABABABABAABAAABAAAABBBBBBBAAAABBBBABBAAA ABABBABBABBBBBBBBBAAABABAABBABAAABBAABBABAAAABAABAABBBAA BBBAABBAABBBAABAABBABBBBBBAABAABAABBABB

*ABA302 AAABBAAABBAA-BAABBAABAAA-AAAAA-BBBABA-AB-BBABAAAABABABB BAAA-BBBAAB--A-AAABABBBBBBB-BAABBBAABBBAABBBABBB-BAABBBA B--ABB-AABABB-BB---AA-BB----BB-AA-BB-AB

*ABG010 ABAA-BBAABAAAABBBA-B--BBBA-B-B-BB-BBABABBB--B-B---AAAAB --BAABBAAAABABAABBAABABBAAABBB---BAA-BB-BAAAB-A-BBBB-B-B AB-----ABB----BBB-BBA-BB-BB---B---BA-B-

*His3B BA-AB-B-ABBBABBBBABBAABBBAABAAAB--B-BBBAABAABABAB-BAB-B BABABBABAABBABAAAABBBBBABABBAABBA-ABABBAABAABBBBAABABAAA BAAABAABABAABABABBBBBAABBAAAABBABAAAAAB

*His3C AA-BABAABBABABABABAAAAABBBBAABBBAAAABABBBBBAAAABABAAABB BBAABAB----BBB-BB-BBBAB-BAAABAB-A-BBAB-BBBBBAAAABBB-AAAB -BAAAAAAABABAAABAAB-ABAAABAAAAAAABBAAAA

*His3D ABBBBABBABBABBBBBBABAABBAABBBBBAABBAAAABABABBAABBABBAAA ABAAABA----ABABBB-AAABB-BAAAAAAAA-ABAB-BAABBBAAAAAABBBAB -BB-ABBBABABBABBABB-ABBBBBBBAAAAABBABAA

*Ubi5 ABBBBBBAAABABBBAABABBBBBBABBABAABBBAABABBAAAAAABAAAABBA ABBAABA-BBAABBBA-BAAAABBABAAAB-AABBBAABBAABBBAAAABBAAAAB ABBBAAAB-AABBABBBAAAABABBBABBBBAABAAABB

*ABG062 -BBBAABBABBBBBBBBBBBAABA-BABBABAABAAAABAABABBAABBBBBAAA BBABABABBBBBBABABBAAABBBBAAAAABABA-BABABA-AAAA-AAAABBBAA ABB-ABBBABAABBBBA---BA-BABBB-BAABABABAA

*ABG652 ABBBBABBABABBAABAABBBBBB-ABAABBABAABABBBBBABBBBABAABBAB BABBBAABABBBBAABAAAAAAAABBBBAABBABAABAAABAAAABAABBAABAA A BBBABAAAABBBABBBAAABBBBABBBBBAAAB-AABAB

*ABG654 AAABAAAABB-ABBBABBAABABAABAAAAABAB-BAAABBABABAAAABABABB -AAAB-BBABBABAAAAA-ABBBB-BB-BAABBBAA-BBAABBBBBBBABAABBBA BBAABBBA-BBBBABBBABAABBBAAABBBBAABBBAAB

*CDO669B ----- ---------------------------------------------AAA AA-A--AAABBAA-B-B-ABB-ABBABBBBBBBBBAAAABAABBAA-ABAAAABAA BBABBBAAABAAAAABBBABAABBAAAAABBABABAABB--

*ABG705 --ABAABBA----AAAAABA-ABBA-AABAAA-BABBAAABBBBBA-AABAAAAA ABAAAAAB-AA-BA-AABB-ABB-BBBBBBABB-AAABAABBAA---A-AA-AABB ABBBABBBAA-AABBBABAABAA-AAABBABABAAB-AB

*ABC706 BABBAAABBA---AAAAABAAABAA-BABAAB-BAABAAABBBBBA-AAAAA--A AAAAAAAB-AAAABBAABA-ABBAABBBABBBBAAAABAAABAABABBAAAAAABB ABBBBAABA-AAABBBABAA-AAAAAABBB-BBAABBAB

*ABG707 ABAAAAABAABB-BBABBBBAAABBBAABBAABBBAAABABABBBABAB-AAABB AABBAAABAAABBBBBABA-AAB-BBABAABBABAABBBBAABABBBBBAABBB-A BBABBAABABABAAABBBABABB-BAAAAA-AAABABBA

*MWG010B --------------------BBBAAAAAABAAB-BABBBABBBAABAABAAA ABBABBBAAABABBBBABAABABAA-ABAAAABBBABAAAAABAAABABABAB-AA A-BBBB--A-AAAABAABABBABBABAABB-B-ABBAAABB-

*bAL882 ----------A-BA--B--AABBA--AABAAABABBBBAABBBBBAAB-AABBB BAABBBABAAABBAABBAAA---AAA-AAAA-A-ABA-AB-ABBABBBAABAABAA AAAA-AAABAABABABAAAAABAAAABABABABBBABAAA

*MWG838 AABBAAAABBABABABBBAABAAAABAAAAAAABBBAAABBABABABBBBABABB BABABBBBABBAAABAAABABBBBBBBABAABBBABBAAAABBABABBABAABBBA BBAABBBAAABBBBBBBABAABBBAAABBBAAABABAAB

*MWG503 AAABABBAABABAABAABAAAAABBBBAABBBABAABABBABAAAAABABABAAB BBAABABBAAABABABBAABBABABAAABABBAABAAAABBABBAAAABBBAAAAB AAAAAAAABBABAAABBABAAAAAABAAAAAABBAAAAB

*MWG522 B-B----B--B-BAABB-BBAAABABBAAAABABAABAABAAAAABAAABAAAAA ABABABBBBAAAAAABAAAAABBBABABABBBBAABABABAAABBBBBAABBBABB ABBABA-BAAAABBBBABAABAAAABABBBABBABBAAA

*ABG708 BAABAABBAAABAAAAAABAAABBABAABAAABBAABAAABBBBBAAAABAAAAA AAAAAAABBAAABABAABBBABB-BBBBBBBBBA-AABAABBAABABAA-ABAABB ABBBAAABABAAABBBABA-BAAAAAABBABABAABBAB

*MWG820 ABBBAAAAAAABBBAAAAABBABBBABBBBAABBBAABAAAAAAAAABBAAABAA BBBAABAABBAABBBABBABABBBABAAABABABBBAABBAABABABABBBAAAAB ABBAAAAAAAAABABBBBAAABBBBBABBABAABAAABB

*cMWG682 BBABAAAABBBA-BABBABBBABBB-BABBBBBABBAABBBAA-AA-ABAAABAA ABBABBBAABAAABBAAAA-BAB-AABABABBA--AAAABAAABB-BB-AABABBA BAAABAAAAA-BAAAB-BBAABAAB-AAAAABAABBBAA

*ABC303 AAABAAAABBAABABBBBBABABAAABAAAABBABBBBBAABBBABBBABBABAB ABABBAAABABBBAABAAABAA-BAAAAAAABAAABABBAABABBBAABABAAB-A AABBBA-AB-AAAABAABBAAABBBBBBABABBBBAAAB

*MWG800 BAAAAABAABBBABAAA-AAABBABAABABABABBBBBBBABBAAAAABABBBBB BABABBABBBBBABBBABABBBBAAAABAABAABABABBABBAB-BAAABBABBAA AAABB-BBA-AAAABBBBBBB-BBAAAABBBABBAABAB

*MWG620 A-BBAA--ABBBBBBBB---AABAABABBABAABAAAABAABABBAABBBBBAAA BBABABABBBAABABABBAAABBBBAAAAABABAABABABAAAAAAAAAAAABBA A ABBAABBBABAAB-BBABBAAABBBBBBABAAAABABAA

*MWG502 BABBAABBAABBBAABBABBAABBBBBABBBABAABAAABBABBBAABABABAAA ABAABABBBABABAABABBABBBABBAABAABBAAABABBBAABBAAABABBAABB BAABABBABAABBBBAABBABAABAABBABBABAABBAA

*ABG712 BBBAAAABBABBBABABBBBAAABB-AAAABBBBBAAABBBAAABA-AABAAABB ABABAAABAAB-BBBBBAA-ABB-BAABABBBA--BBBBBAAABB-AA-AABBABB ABBBBBBBAB-BAABBAAABABA-ABBAAA-BBABBBBA

*ABC717 BABAAAABBA-A-AAABBBBAAABA-BAAAABABAABABBAAAAAB-AABAAAAA AAABABBBBAAAAAABAAABABA-BBABABBBBAABABABAAABBB-BAAB-BABB ABBABAAAAAAABBBBABAABAAAAAABBBABBBBBAAA

*MWG902 AAABB-AABBAABBAAB-AABAAAAAAAAAAB-BAB--ABBABABAAA-BABABB BAAABBBBABBABAAAAAB-BBBBBBBBBAABBBAABBBA-BBBABBBABAABB-A BBAABBBAABABBABBBABAABBBAAABBBBAABBB--B

*MWG858 BAABABBABBABAABBBABBAABBBBBAAABBBAAAAABBBBBBAABABBAAAAB ABBBAABAABABABBBAAABBABBAAAABBABAABBABABBABBBABBBBAABAAB ABAAAAAAABAAABAABBBAABAABAAAAAABABBABAA

*cMWG652a ABBBBABBABBABBBBBBABAABBBABBBBBAABBAAAABABABBAABBABBAAA ABAAABAABBAABABBBBAAABBBBAAAAAAAABABABBBAABBBAAAABAABBAB ABBAABBBABABBABBABBAABBBBBBBAAAAABBABAA

*cMWG652B ABAABABAAAABBAABBAAAABBABBAABAAABABBBBA-BBBBBAABBAABBBB AABBBABAAABBAABBAAABAAAAA-AA-AA-BABBA-B-BB--BAB-------A- A---A--BAABABAB-A-AA---AAB-BAB---B-B--A

*MWG950 BAABABBAABABABABB-BAAAABBBBAAABBAAAABABBBBBAAAAAABAAAAB ABABAABAABABABBBAAABAABAAAAABBABABBBABABABBBABBBBBBAAA-B ABAAAAABABAAABAABBBBAB-ABBAAAAABABBAAAA

*bAP91 ABAABABAAAABBAABBAAAABBABBAABAAABABBBBAABBBBBAABBAABBBB AABBBABAAABBAABBAAABAAAAABAAAAAABABAAABAABBABBBAABAABAA A AAAAAAABAABABABAAAAABAAAABABABABBBABAAA

*MWG058 AAAAAABABBAABBBBBABABABAAABAAAABBABBBBBAABBBBBBBABBABAB ABABBAAABABBAAABAAABAAABAAAAAABBAAABABBAABABBBAABABAABA A AABBBAAABAABAABAABBAAABBBBBBABABBBBBAAB

*ABC308 AAAAAABABAABBAABAABBBBBAAAAAABAABABABBBABBBAABAABAAAABB ABBBAAABABBBBABAABABAAAABAAAABB-ABAAAAABAAABA-ABABBAAA-B BBBBAA-AAAABAABABBABBABAABBBBBABBAAABBA

*RisBPP161C BAAAA-BABBABAB-AABAAABBABAABABABABBBBBBBABBAAAAABABBBBB BABABAABBBBBABBBABBBBBBAAAABAABBABABABBABBBBBAAAABBABBAA AAABBBBBABAAAABBBABBBBBBAAABBBBABBBABAB

*bBE54A AAAABAA-BBAABABBB-BABABAAABAAAABBABBBBAAABBBBABBBBAABAB ABBBBAAABABBAAABAAABAABBAAAAAABBAAABABBBABAB-BAABABAABAA AABBBAAABAAABABAABBAAAAABBABABABBBBBAAA

*ABG314A ABAABABBAABBABAABBBBABABBBAABBAABBAAABBABABBBBBABAAABBA AABBAAABAAABBBBBABABAABBBBABAAABABBABBBBAABABBBBBBAABBAA BAABAAABABABAAABBBBBABBBBAAAAABAAABABBA

*ABG314B ABAABABBAABBABAABBBBABABBBAABBAABBAAABBABABBBBBABAAABBA AABBAAABAAABBBBBABABAABBBBABAAABABBABBBBAABABBBBBBAABBBA BAABAAABABABAAABBBBBABBBBAAAAABAAABABBA

*ABG315 ABABAABB-BBABBABBB--AABBAABABABABBABABBBABBABAABABAAAAB BABABBABAAABAAABBBAABBBAAAABBAAB-BABBBBABABBABAABBBBAABB AAAAAAABBBBABBBABABBBBBABABBAABABABAABB

*bBE54B AABBAAAAAAABBBAAAAAABBBBBABABBABBBBABBAAAABABABBBAAABAB BBBAABAAAAABBBBABBBBABBBABAAABAAAABBAABBABBBBABABBBAAAAB ABBAABBABAAABABBABAAABBBBBBBBABBABBAABB

*bBE54C AAABAAABAABBABABABBABBAABAAAAABABBAAAAAAAAABBAAABBABAAA BBABABBAAAAAAAAAABAAABAABAABBAABABBBBBAABBBBBAAAAAABAAB A BAAABAAABBBBBBAABBBABABABABBBAABBAAABBA

*bBE54D BAABABAABBABABABABAAAAAAABBAABBBAAAABAABBBBAAAABABAAAAB ABAABABBABABBBABBBABBABABAAABAABABBAABABABBBABAABBBAAA-B ABAAAAAAABABAAABBABBABAAABABAAABABBAAAB

*bBE54E ABBBAABAABABBAABAABBBBBAAABBABBABABAABBABBBBBBBABAABABB AABBBAABABBBBAABAABAAAAABBAAABBBABAAAAAABAAAABABBBBABABA BBBABAAAABBBABBBAAABBBAABBABBAAABBAABAA

*ABG316A ABABAABABBAAABABABABBABAAAABBBABBBBBABABBABABABAAABBAAB ABBBABBABAABAABABBAAABABAAABBBABBB-AABBABAAABBBABBABAA-A BABBBAAABBBABBBAAAABAABBBBBBBBABBABAABA

*ABG316B BABBAABBAABBBAAABABAAABBABBABBBABBABBAAABABBBAAAABABAAA ABAABABBBABABAABABBBABBABBAABAABBAAABABBBAABBAAABAABAABB AAABABBBBAABBBBAABBABAABBABABBBABAABBAA

*MWG584 ABAAABBAABAAAABBBAABBABBBABBBBABBBBBABABBBBABABBBAAAAAB AABAABBAAAABABAABBAABABBAAABBBABBBAAABBABAAABBAABBBBABAB ABABAAAABBBABBBBBABBAABBBBBAAABBBABAABA

*RisP103 ABBBAABAABABBAABAABBBBBAAABBABBABABAABBABBBBBBBABAABABB AABBBAABABBBBAABAABAAAAABBAAABBBABAAAAAABAAAABABBBBAAAB A BBBABAAAABBBABBBAAABBAAABBABBAAABAAABAA

*MWG514B BABABAABBABBBABABBBBAAABBBAAAABBBBBAAABBAAAABABBABAAABBA BABAAABAABABAABBAABABBBBAABABBBABABBBABAAABBBBABAABBABBA BBABBBAABABAABBABAAABABAABAAABBBBBBABA

*MWG089 ABBBBBBABBAAABAABABAAAABAAAAABAAABBBBABABAAAABBABABAAAA BBABBABBABBBAABBBBABBABAAABBABAAABBAAABAAAAAABAAAAABBAAA BBBAABAABBBBAABAABBABABBB-BBBAABABBBBBB

*ABG059 ABABBABABBABBBBAABBBBBABBAAABBAAAAABAABABBAABABBAAAABAA BABABABBBAAAAABBBBA-ABAABABA--BBAABBBBBBA-BB-B-BABBBBBAA ABBBA-ABBA-AABBBABAAABBBAABABAABBAABBAA

*ABG316C BAABABAAABABABABABAABAAAABB-AABBAABABAABBBBAAAABABAAAAB ABAABABB-BABABBBBAABAABAAAAABBABA-BAABABABBBABABBBBAAA-B ABAAAA--ABAAAAAABABBABAABBABAAABABBAAAB

*ABG316D AAABABABAABBABBBABBABBAABBAAAABABBAAAAAAAAABBAAABBABAAB BB-BAABAAAAAAAAAABAABBAABAABBAABAABBABAABBBBBBABAAAAAAAA BAAABAAABBBBBBAABBBABABABA-ABAABBAAABBB

*ABG316E AAABABABAABBABBBABBABBAABBAAAABABBAAAAAAAAABAAAAABABAAB BB-BAABAAAAAAAAAABAABAAABAABBAABAABBABAABBBBBBABAAAAAAAA AAAABAAABBBBBBAABBBAAAAABA-ABAABBAAABBB

*ABG317A AAABABABAABBABBAA-BABBABBAAAAABABBAAAAABAAABBAAAABBBAAB BBABAABAAAAAAAAAABAABAAABAAAAAABAABBABAABBBBBBABAAAAABA A AAAAAAAABBBBBBAABBBAAAAABABABAAABAAABBB

*ABG317B AAABABABAABBABBAA-BABBABBBAAAABABBAAAAABAAABBAAAABBBAAB BBABAABAAAAAAAAAABAABAAABAABBAABAABBABAABBBBBBABAAAAABA A AAAABAAABBBBBBAABBBAAAAABABABAABBAAABBB

*ABG318 BAABBBAA-BA-BBBBBA--AABBBBBABABBBAAAAABBBBBBAABABBAAAAB ABBBAABAABABABBAAAABBABBAA-ABAAB-ABAABABBABBBABBBBAABAAA BBAA-A-AABAA-BAABBBAABAABAAAAAABABBBBAA

*B15C BAABABAAAB---BABAABABAABABBAAABBAAAABAAB-BBAAA-B-BAAAAB ABAABABBABABAB-BBAA-AAB-AAAABBABAB-BABABABBBABABB-BAAAAB ABAA-AAAA-AAAAAA-AB-A-AABAA-AAABABBAAAA

*AtpbA AABBBBAAAABBABABBABBAABBBAABAAAAAABBBABAAAAABABABABABAB AABABBBAAABAAAABBAABBBABBABBAABBABABABBBAABABBBAABBABABA BAAABBBBABBBBABABABBAAAABAAAABBAAAAAAAA

*AtpbB BBBAABBBABAAAABABBAB-BABBABABBBABBABBBABBBBABABBBAAAAAA BABABBB-AABBABABBBAABBBAAAAABAABABABAB-A-AA-A-AABBBBAAA- ABABAAAABBBABBBBBBBBBAAABABAAABABABABBB

*ABC257 BABBB-BAAB-BABBBBABBAABBBAABAAAAAABBAAB-ABAABABABABABAB AABABBA-AABAAAABBAABBBBBBABBAABBABABABBBAABABBBBAABABA-A BABABAABABBBBABABBBBBA-ABAAAABBAAAAAAAA

*cMWG691 ABABAABABBAAABAB-BABBABAAAABBBABBBBBABABBABABABAA-BBAAB ABBBABBABAABAABABBAAABABAAAB-BA-BBA--BB-B---B-B-BB-B---- B-BBB---BBBABBBAAAABAABBB-BBBBABBABAABA

*MWG571B BBBAABBBABBBAABABBABBBABBABABBBABBABBBBBBBBABABBABAAAAA BABABBAAAABBABABBBAABBBAA-AABAABABABBBBABABBA-AA--BBAA-B ABABAA-BB-BABBBBBABBBAAABABAAABABA-ABBB

*MWG571C ABABAABABBAAABABABABBABAAAABBBABBBBBABABBABABABAAABBAAB ABBBABBABAABAABABBAAABABAAABBBABBBAAABBABAAABBBABBAB---A BABBBAAABBBABBBBAAABAABBBBBBBBABBABB-BA

*MWG571a ABABAABBABBABBAABBABAABBAABABA-ABBABABB-ABBABAAAABAAAAB AAAABBABAAABAAABBBAABBBAAAAB-AA-ABABBBBABA-AA-AABBBBAA-B BAA--ABBABAABBBABAAABBBAB--BAABABABAABB

*MWG634 AAABAAAABBABAABAAAAAAAABBBABBBABAAABAAABABBABBBABBAAAAA BB-ABBABAABAABBBABAAABBBBABBAAABBBABABAAAAABABAAABBAAABA AABBAAAABBABBABAABAAAAAABAAAABABABAABBA

*iHxk2 AAAABABAABABBAABBAAAABBABBBABAAABABBBBAABBBBBAABBAABBBB AABBBABAAABBAABBAAABAAAAABAAAAAABABAAABAABBABBBAABAABAA A AAAAAAABAABABABABAAAAAAABBABABABBBABAAA

*iPgd1A ABBBBBAABBAAAABABABABABAABAAABAAAABBBABABAAAABBBBABBAAA ABABBABBAABBABBBBBABABABAABBBBAAABBAABAABAAAABAABAABBBAA BBBAABBABBBBABBABBBABABBBBABBAABABBBABB

*ABG319A AAAAAAAABBABBAABBAAAABBABABAAAABBABBBBAAABBBBAABBAABBBB AABBB------------------------------BABBAABBABBBAAAA AAB-AAA-----BBAAABABAAABAAAAABBABABABBBBBAA-

*ABG319B AABBBAAABBABABBAB-AABAAAABAAAAAAABBBAAABBABA-ABBBBABA-- -ABAB-BBABBAAABAAABA-BAB--BABAAB-B--AAAAABBBBA--ABAABBBA BBAABB-AAABBB-BBBABAABBBBAAABBAAA-ABAAB

*ABG319C AB-AAABAA-ABAAABBBBAABABBBABBBBABB-BBAA-BAABBAAB-AA-BBB AABBBABAAABBAABBAAABAAAAABAAAAAABAAABABAAAAABBBAABAAAA-A BAAAAAABAABA-ABAAAAABB-ABBAAABABBBABAAA

*MWG036B BBBBBBAABBAAAABABABABABAABAAABAAAABBBBBBBAAAABBBBABBAAA ABABBABBABBBBBBBBBABABABAABBABAAABBAABAABAAAABAABAABBBAA BBBAABBAABBBAABAABBABABBBBABBAABABBBABB

*MWG813a ABAABABBAABBABAABBBB-B-BBBAABBAABBAAABBABABBBBBABAAAABA AABBAAABAAABBBBBABABAABB-BABAAABABBABBBBAABABBBBBBAABB-A BAABAAABABABAAABBBBBBBBBBAAAAABAAABABBA

*MWG813B AAAAAABA-AABBAABA-BB-B-AAAAAABAABA-ABBBABBBAABAABAAAABB ABBBAAABABBBBABAABABAAAA-AAAABBBABAAAAABAAABABABABBAAA-B BBBBAAAAAAABAABABBABBABAABBBBBABBAAABBA

*cMWG733 BABBBBBAABBBABABBABBAABBBAABAAAAAABBAABAAAAABABABABABAB AABABBABAABAAAABBAABBBABBABBAABBABABABBBAABABBBBABBABABA BABABBBBABBBBABABABBBAAABAAAABBAAAAAAAA

*MWG877 BBBABAABBABBBABABBBBAAABBBAAABBBBBBAAABBBAABBABABBAAABB ABABAAABAABABBABBBABABBBBAABABBBABABBBBBAABABBAABAABBABA ABBBBBBBABABAABBABABABABAABAAABBAABBBBA

*cMWG706a BAABBBBAABBBABBBBABBAABBBAABAAAAABBBAABAABAABABABABABAB AABABBABAABAAAAABABBBBBBBABBAABBABABABBBAABABBBBAAB----A BABABAABAAAABABABBBBBAABBABAABBAAAAAAAA

*MWG706B ABABBABABBABBBBAABBBABABBAAABBAAAAABABBABBAABABBAAAABAB BABBB--------------------------------------------- ----------------BAABBBAAAAAAAAAA-ABAABBAABBAA

*MWG706C BBBBBBAABBAAAABABABABABAABAAABAAAABBBBBBBAAAABBBBABBAAA ABABB--------------------------------------------- ---------------BBBAABAABBABABBBB-BBAABABBBABB

*MWG836 ABBABBBABBABABABAABA-BABAAAABBAABBBBBBBABAAAABBABAAAAAB BBABBABBABBBBABABBABBABAAABBABBBABBAAABAAAAABBABABBBBA-B BBBBAAAAABBBAABAABBABABBBBBBBBABBBBABBB

*cMWG720 AAABAAABAABBABBBABBA-B-ABAAAAABABBAAAAAAAAABBAAABBABAAB BBABAABAAAAAAAAAABAAABAABAABBAABABBBABAABBBBBBAAAAABAA-A BAAABAAABBBBBBAABBBABABAAABBBAABBAAABBA

*MWG837 ABABBABABBABBBBAABBBABABBAAABBABAAABABBBABAABABBAABABBB BABBBABBBAAAAABB-BABABBABABBBABBAAABB-BBAB-BAAABABBBBB-A ABBBBAABAABAABBBAAAAAAAAAABABAABBAABBAA

*B32E AAABAAAABBAABABBBBAABAAABBABABABBAABBABBABBAABBBBBBAAAA AB-BBBABAABABABBABABABBBAABAAAABAAABABBAABABABAAABBAABBA AABBBAAABBABAABAABAAAABBBABAABABABAAAAA

*MWG912 AABBBBAABAABABABBBBB-BBBBABBAAAAAABBBBABAAAABAABBAAABAB BABABBBAAABAAAABBAABBBABBBBBAAABABABABBBAABAAABABBBABA-A BBAAABBBAABAAABABABBAAAABAAAABBAAAAAAAA

*MWG003 ABAAAABABAABBBABAABBBBBAAAAABBAABABABBBABBBAABAABAAAABB ABBBAAABABBBBABABBABAAAABABAABBBABAAAAABAAABABABABBBAA-B BBBBAAAAAAABAABABBABBABAABBBBBABBAAABBA

*ABC261 AABBBBAAAAABABABBABB-BBBBABBAAAAAABBBBBBAAAABABABAAAAAB AABABBBABBBAAAABBAABBBABBABBAAABABABABBBAABABBBABBBABA-A BBAABBBBAABBAABABABBAAAABAAAABBAAAAAAAA

*ABG320 ABBBBBAABBAAAABABABABAAAABAAABAAAABBBABABAAAABBBBABBAAA ABABBABBABBBBBBBBBABBABBAABBABAAABBAABBABAAAABAABAABBAAA BBBAABBABBBBAABAABBABABBBBBBBAABABBBABB

*ABG064 -AABAABBAAABAAAAAABAAABBAB-ABAABBBAABAAABB-BBAA-A-A-AA- A-AAAA---A-AB--AA-BA--BABB-BBBBBBAAAABAABBAAB-BBAAABAABB B---AAA---AAA-BB--ABBAAA--A---AAB---B--

*ABG074 -AAAAABABBABBBBAABAA-BBBBA-BBBABAABBB-BBAB-ABAA-B-B-BB- B-BBBA-B-B-BA--BABBBB--AAA-BAABBABABABBABBBBAAABABBBBBAA B---BBBBABAAA-BB--B-BBBA--B-B-B-B---B--

*ABG070 -BA-AA-ABBAA-BA-BBA----AAA-BBBABBBBBABABBA-ABAB-A-B-AA- B-ABAB-B-A-BA--AB-AB--ABAA-BBBABBBAAABBABAAABBB-BBABAABA B---BAA--BBAB-BA--A-AABA--B-B-ABB---A--

*ABG069 -ABAAAABBABABAAAABBB-AABAB-AAAABABA-B-BBAA-AABA-A-A-AA- A-ABAB-B-A-AA--BAAABA--BBB-BABBBBAABABABA-ABBB--AABBBABB A---BA--AA-AB-BB--A-BAAA--A-B-A-B---A--

*ABG055 -ABBBB-ABAABABABBBBB-BBBBA--AAAAA-BBBB-BAA-ABAA-B-A--A- B-BABB-A-A-AA--BB-BB---B-B-BAAABA-ABABBBA--A-A--BBBABABA A---A----ABAA-BA--B-AAAA--A-A-AAA---A--

*MWG798a AAAABAABBABAABABBABAABBBBBAAAAABAAAABAAAAABAAAAAAAABBAB ABBBBBBAAABBABBBBABABBBABBBAAAAAAABBABABBBABAABAAAABBAAA BBBAABBBBABABABAAAAAABABBABAABBBAABBBAA

*MWG798B ABAAAABAABAAAAABBAABBABBBABBBBABBBBBABABBBBABABBBAABAAB AABBABBAAAABABBABBAABABBAAABBBABBBAAABBABAAABBAABBBBABAB BBABAAAABBBABBBBBABBAABBBBBAAABBBABAABA

*MWG635B ABBBB AABABABBABBAABBBBBBBBBAABBABABBABBBBBBBBBBABBABBABBBBBAA AABBAABAABAAAAAABBBBAAAABAABAABBABBAABAAAABBAABBAABBBAA A AABBBBABABAAAAABBABBBBBAAABBAABAB

*MWG635a AAABAAAABBAABABBBBAABAAABABAAAABBAABBABBABBBABBBBBBABAB ABBBBBABBABBBAABAAABABBBAABAAAABAAABABBAABABABAABBBAAB-A AABBBAAABAABAABAABBAAABBBBBBABABBBAAAAA

*MWG635C AAB-BB-A--ABABAB-B-B-B-BBAB-AA---A-B-----AA--ABA-AAAAAB AA-A-BBAAABAAAAB-AABBBABBABBAAABABABABBBAABABBBABBBABA-A BBAABB-BAABBAABABABBAAAABAAAABBAAAAAAAA

*B12DA ABBBABBAAABBBBBAABAB-BBBBABBABAABBBAABABBAAAAAABAAAABBA ABB-ABA-BBAABBBABBAAAABBABAAABAAABBBAABBAABBBAAAABBAAAAB ABBBAAABAAABBABBBAAAABABBBABBABAABAAABB

*B12DB BAABAABBAAA-A-AAAABA-ABB-BBABAABBBAABAAABBBBBAAAABAABAA AAABAAA-BAAAAA-AA-ABABBAABBBBBBBBAAAA-AAABAA-ABBAAAAAABB ABBBBAABABAAABBBABAABAAAAAA-BAAABAABBAB

*ABC252 AAABABBBAABAAABBABBABAABBBAAABBBBBAABAABAABBAAAAABBBAAB BBABAABAAAAAAAABABAABAAABAABBABBAABBAAAABBBBBBAAAAAAABA A AAAABAABBBBBABAABBBAAAAAAAABBAABBAAAABB

*ABG065A -BBAAB-BABAAAABAABABBBABBABABBBABBABBAA-BBBABAB-BAA-AAA BABABBBA-ABBABABBBAB---A---ABAA-A-ABABBA-AABABBBBBBBAAAB ABAAABABABABBBBAABBB-ABABBBABAAAABB-AB-

*ABG072 AAAAABBBABAAAABBBBAABAABBBBABBBBABAABBBBABABAAABABA-AAB B-ABAABA-ABBABABABABBAAABA--BABBAABBAAAB-----BAAAAAAABA ABAAAAAABBBABABAABBBAA-AAABABBAAABBAAAAB

*ABG075 -BBBBBAABBAA-ABA-ABA-ABAAB-AABAAAABBBABBBA-AABB-B-B-AA- A-A-BA-B-BBBB--BB-AB---BAA-BABAAABBAABAAB-AAABAABAABBBAA BBB-ABB---BBA-BA--B-BABB--A-B-ABA---A--

*MWG911 A BAAAABABAABBBABAABBBBBAAAAABBAABABABBBABBBAABAABAAAABB ABBBAABBABBBBABABBABAAAABABAABBBABAAAAABAAABABABABBBAAAB BBBBAAAAAAABAABABBABBABAABBBBBABBAAABBA

*MWG520A BAABA BBABBABABABBABA-AABBBBAAABBAAAAAABBBBBBAAAABBAAAABABBBAA BAABABABBBAAABBABAAAAABBABABBBABABBBBBBABBBBBAAAABABAAAA AAABAAABAABBBBABAABBAAAAABABBAAAA

*MWG520B --ABABBBAABAAABBABBA-AABBBAAABBBBBAABAABAABBAAAAABBBAAB BBABAABBAAAAAAAB-BAAAAAABAABBABBAABBAAAABBBBBBAAAAAAABAA AAAABABBBBBBABAABBBAAAAAAAABBAABBAAAABB

*MWG878 BAABAAAABBBABBABBABB-ABBBBBABABBBAAAAABBBBABAABABAAAAAB AB-BABAAABAAABBAAAAABABBAABABAABAABAAAABAABBBABBBBABAB-A BBAABBBAAABBABABBBBAABAABAAAAAABAABBBAA

*MWG555a BBBBBBAABBAAAABABABABABAABAAABAAAABBBABBBAAAABBBBABBAAA ABABBABBABBBBBBBBBABABABAABBABAAABBAABAABAAAABAABAABBBAA BBBAABBABBBBAABAABBABABBBBABBAABABBBABB

*MWG555b ABABABBBABBABAAABBABAABBAABABABABBABABBBABBABABBABAAAAB BABABBABAAABABABBBAABBBAAAABBAABABABBBBABABBABAABBBBAABB AAAAAAABBBBABBBABABBBBBABABBAABABABAABB

*MWG2040B BAABAABBAAABAAAAAABA-ABBABAABAABBBAABAAABBBBBAAAABAABAA AAAAAAABBAAAAABAABABABBAABBBBBBBBAAAABAAABAABABBAAAAAA-B ABBBAAABABAAABBBABAABAAAAAABBAAABAABBAB

*ABC321 AAAAAABABBAABABBBABABABAAABAAAABBABBBBBAABBBBBBBBBBABAB ABABAAAABABBAAABAAABAABBAAAAAABBAAABABBAABABBBAABABAABA A AABBBAAABAABAABAABBAAABBBBBBABABBBBBAAB

*ABC322A AAAAAABABAABBAABAABBBBBAAAAAABAA-ABA-BBABBBAABAABAAAABB ABBBAAABABBBBABAABBBAAAABAAAABBBABAAAAABAAABABABABBAAAAB BBBBAAAAAABBAABABBABBABAABBABBAABAAABBA

*ABC322B AABBBBAAAAABABABBABB-BBBBABB-AAAAABBBBBBAAAABABABAAAAAB AABABBBAAABAAAABBAABBBABBABBAAABABABABBBAABABBBABBBABAAA BBAABBABABBBBABABABBAAAABAAA-BBAAAAAAAA

*BCD340A AABBBBAABAABABA----------AB-AAAAAABBBBA-AAAABAABBAAABA BBABABBBAAABAAAABBAABBBABBBBBAAA-ABABABBBAA-AAABABBBABA- ABBAAA--BAABAAABABABBAAAABAAAABAAAAAAAAA

*BCD340B AABBBBBAB-ABBBABBBBB-BBBBABBABAABABBBBB-BBBABBABBAAABBB BBBBBBBBABBBBABBBBABBBAB-BBBABBBABABABBBAABBABBBBBBABA-B BBBBABBBAABBAABABBBBBABABBBBBBABBAAABBA

*BCD340C AAAAAABA-AABBAABAABB-B-AAAAAABAABABABBBABBBAABAABAAAABB ABBBAAA-ABBBBABAABBBAAAABAAAABBBABAAAAABAAABABABABBAAA- BBBBBAAAAAAABAABABBABBABAABBABBAABAAABBA

*BCD340D AAAAAABA-AABBAABAABB-B-AAAAAABAABAAA-BBABBBAABAABAAAABB ABBBAAA-ABBBBABAABABAAAA-AAAABBBABAAAAABAAABABABABBAAA- BBBBBAAAAAAABAABABBABBABAABBBB-ABBAAAB-A

*BCD340E ABBBAABAAABBBBBAABABBBBBBABBBBAABBBAABABBAAAAAABAAAABBA BBBAABAABBAABBBABAABABBB-BAAABABABBBAABBAABBBAAAABBAAA- BABBAAAAAAAABBABBBAAAABABBBABBABAABAAABB

*CDO497 ABBBABBAAABBBBBAABABBBBBBABBABAABBBAABABBAAAAAABAAAABBA BBBAABAABBAABBBABBAAAABBABAAABAAABBBAABBAABBBAAAABBAAAAB ABBBAAABAAABBABBBAAAABABBBABBABAABAAABB

*ABC255 ABAABBBABAABABABAABABBABAAAABBAABABABBBABBAAABBABAAAABB ABABBABBABBBBABABBABAABABABAABBBABBAAABAAAABBBABABBBBAAB BBBBAAAAAAABAABAABBBBABBBBBBBBABBAAABBA

*MWG583 BABABAABBABABAAABBBB-AABABBAAAABABAABABBAAAAABAAABAAAAA AAABABBBBAAAAAABAAABABABBBABABBBBAABABABAAABBBBBAABBBA-B ABBABAAAAAAABBBBABAABAAAABABBBABBBBBAAA

*MWG077 AAABAAAABBAABABBBAAAAAAABBABABABBAABAAABABBABBBBBBBAAAA ABAABBABAABAAABBABAAABBBBABAAAABABABABBAAAABABAAABBAABBA AABBAAAABBABAABAABAAAABABAAAABABABAAAAA

*MWG064 BAABBBBABBABABABBABBAABBBBBAAABBBAAAAAB-BBBBAABABBAAAAB ABBB-ABAABABABBBAAABBABBAAAABBABAABBABABBABBBABBBBAABA-B ABAAAAAAABAAABAABBBAABAAAAABAAABABBABAA

*MWG680 BBBAABBBABABAABABBABBBABBABABBBABBABBBB-BBBABABBAAAAAAA BABABBBAAABBABABBBAABBBAAAAABAABABABABBABAABABAABBBBAA-B ABABAA-BBBBABBBBBBBBBAAABABAAABABABABBB

*YAtp57A AAAAA-BABBBBBAABA-BBBBBAAAAAABAABABABBB-BBBAABAABAAAABB ABBBAAA-ABBBBABAABBBAAAABAAAABBBAB-AAAAA-A-B-BABABBAAA-B BBBBAAAAAAABAABABBABBA-AABBABBAABAAABBA

*MWG938 ABABBABABBABBBBAABBBABABBAAABBAAAAABAABABBAABABBAAAABAA BABABABBBAAAAABBBBABABAABABABABBAABBBBBBABBBABABABBBBBAA ABBBAAABBABAABBBABAAAAAAAABABAABBAABBAA

*MWG557 BAABABAAABABABABAAAA-AABABBAAABBAAAABAABBBBAAAABABAAAAB ABAABABBABABABBBBAABAABAAAAABBABABBBABABABBBABABBBBAAA-B ABAAAAAAABAAAAAABABBABAABBABAAABABBAAAB

*ABC323 BBBAABBBABAAAABABBABBBABBABABBBABBABBBABBBBABABBBAAAAAA BABABBBAAABBABABBBAABABAAAAABAABABABABBABAABABAABBBBABA- ----AA-ABBBABBBBBBBBBAAABABAAABABABABBB

*ABC254 AAAAAABABAABBAABAABBBBBAAAA-AB----BABBBABBBAABAABAAAABB ABBBAAABABBBBABAABBBAAAABAAAABBBABAAAAABAAABABABABBAAA-B BBBBAA-AA---AABABBABAABAABBABBAABAA----

*MWG042A ABABBABABBABBBBAABBBABABBAAABBAAAAABABB-BBAABABBAAAABAB BABBBABBBAAAAABBBBABABBABABABABBAAABBBBBABBB-BABABBBBB-A ABBBBAABAABAABBBAAAAAAAAAABABAABBAABBAA

*MWG042B BBBBBBAABBAAAABABABABABAABA-ABAAAABBBBB-BAAAABBBBABBAAA ABABBABBABBBBBBBBBABABABAABBABAAABBAABAABAAA-BAABAABBB-A BBBAABBAABBBAABAABBABABBBBABBAABABBBABB

*MWG042C AAAAAAABBABBAAAAAABAAABAABBBBAABBBAABAA-BBBBBAA-ABAABAA ABAAAAAABAAAAABAABABABBAABBBABBBBAAAABAAABAA-ABAAAAAAA-B ABBBBAABABAABBBBABBABAAAAAABBBABBAABBBB

*MWG934 AABBAAAAAAABBBAAAAAABBBBBBBABAABBBBABAAAAABABAABBAAABAB BBBAABAAAAABBBBABBBBABBBABAAABAAAAABAABBABBBBABABBBBAA-B ABBAABBABAAABABBABAAABBBBBBBAABBABBAABB

*F3hA AAABABBB-ABAAABBABBA-A-BBBAA--BBBBAABAABAABBAAAAABBBAAB BBABAAB-AAAAAAABABAABAAABAABBABBAABBAAAABBBBBBAAAAAAAB-A AAAABAABBBBBABAABBBAAAAAAAABBAABBAAAABB

*MWG920-1A BABBA ABBAABBBAAABABAAABBABBABBBABAABBAAABABBBAAAABABAAAABAABA BBBABABAABABBBABBABBAABAABBAAABABBBAABBAAABAABAABBAAABAB BBBAABBBBAABBABAABAABBBBBABAABBAA

*MWG920-1B ABABBABABBABBBBAABBBABABBAAABBAAAAABAABABBAABABBAAAABAA BAB-BABBBAAAAABBBBABABAABABABABBAABBBBBBABBB-BABABBBBBAA ABBBAAABBABAABBBABAAAAAAAABABAABBAABBAA

*MWG663-2A ABBBBABBABBABBBBBBABAABAABABB-BAABAAAABAABABBAABBBBBAAA BBAB-BABBBAABABABBAAABBBBAAAAABABAABABABAAAAAAAAAAAABBAB ABBAABBBABAABBBBABBAAABBBBBBABAAAABABAA

*MWG663-2B BAABABBAABABABABBABAAAABBBBAAABBAAAABABBBBBAAAAAABAAAAB A-BB-ABAABABABBBAAABAABAAAAABBABABBBABABABBBABBBBBBAAAAB ABAAAAABABAAABAABBBBABAABBAAAAABABBAAAA

*AdhIntronA AABBA-BAABABBAABA-BBBBBAAABBABAABABAABB-BBBBABBABAAAABB AABBBAABABBBBAABABBBBAAABBAAABBBABAAAAAABAAA-BABBBBAAA-B BBBABAAAAAABABBBBAABBA-ABBABBAAABAAAB-A

*AdhIntronB A-BBBAAABBABABBAB-AABAAAABAAAAAAABBBAAABBABABABBBBABABB BABABBBBABBAA-BAAAB-BBBBBBBABAABBBABBAAAABBABABBABAABB-A BBAABBBAAABBBBBBBABAABBBAAABBBAAABABAAB

*AdhIntronC --ABABAABBABABABB-AAAAAAB-BAABBBAAAABA----BAAAABAB-AAAB BBAABAAAABABBBABBBABAABABAAABAABABBAABABABBBB-AABBBAAA-B ABAA-AABABAB-AA-BABAABAAAB-AAAABABBAAA-

*MWG851a BBBBBBAABBAAAABABABABABAABAAABAAAABBBBBBBAAAABBBBABBAAA ABABBABBABBBBBBBBBABABABAABBABAAABBAABAABAAAABAABAABBB-A BBBAABBAABBBAABAABBABABBBBABBAABABBBABB

*MWG851b ABAABABBAABBABAABBBBABABBBAABBAABBAAABBABABAABAABAAABBA AABBAAABBAABBBBAABABAABBBBABAAABABBABBABAABABBBBBBAABB-A BAABAAABABABAAABBBBBABBBAAABAABAAABBBBA

*MWG851C ABAABABBAABBABAABBBBABABBBAABBAABBAAABBABABABBBABAAABBA AABBAAABBAABBBBBABABAABBBBABAAABABBABBBBAABABBBBBBAABB-A BAABAAABABABAAABBBBBABBBAAABAABAAABABBA

*MWG851D ABAAB ABBAABBABAABBBBABABBBAABBAABBAAABBABABAABAABAAABBAAABBAA ABBAABBBBAABABAABBBBABAAABABBABBBBAABABBBBBBAABB-ABAABAA ABABABAAABBBBBABBBAAABAABAAABBBBA

*MWG497 ABAAABBAABAAAABBBAABBABBBABBBBABBBBBABABBBBABABBBAAAAAB AABAABBAAAABABAABBAABABBAAABBBABBBAAABBABAAABBAABBBBABAB ABABAAAABBBABBBBBABBAABBBBBAAABBBABAABA

*MWG041 AABBBAAABBABABBAB-AABAAAABAAAAAAABBBAAABBABABABBBBABABB BABABBBBABBAAABAAABABBBBBBBABAABBBABBAAAABBBBBBBABAABB-A BBAABBBAAABBBBBBBABAAB-BAAABBBAAABABAAB

*MWG684A AABBBAAABAABBBABAABABBAABBBABAABBBBABAAAAABABAABBAAABAB BBBBABAAAAABABBABBBBABBBBBAAAAAAAAABA-BBABBBAABABBBBBABB ABBAAB-ABAAABABBABAAABBBBBBBAABBAABAABB

*MWG684B ABBBAAAAAAABBBBAAAABBABBBABBBBAABBB-ABAAAAAAAAABBAAABAA BBBAABAABBAABBBABBABABBBABAAABABABBBA-BBAABABABABBBAAABB ABBAAA-ABAAABABBBBAAABBBBBABBABAABAAABB

*KFP153A ABAA---ABBAAABBBABABBBAABAABAAABABBAABBBABAAABBBBABABBB BABBABABA-ABA--ABAAA-AABAABBABBAA--BBBAAABAAABBBABBABBAA BBBABA-AA-BAAAA--AA-ABBA-BAAAAABABBAAB-

*KFP153B ------BABB-ABAAAABAB-BABB-AABB-A-AABAABABBAA-ABB-AAAB-- B--A----B-AAAABB-BABABA--AB-BABBA----BAB--BBABAB-BBBBB- AABBBAA-BB-----------AAAA-AB-B--BBAABBA-

*dSbl ABBB-BBABBAAABAAB-BAAAABAAAABBBAABABBABABAAAABBAB-AAAA- BBABBABBABBBAABBBBABBABAAABBBBBAABBAAABAAA-AABAAAAABBAAA BBBAAABAABBBA-BAAB-ABABBBBBBBAABABBBBBB

*F3hB ------------------------------ABBBBABAAAAAB-BAAB-A AABABBB-A----------------------------------------- --------------------AAABABBABAAABBBBBBBAABBAB BAABB

*aABG70 ABABA-BAB--AAB-BBBABBABAAAABBBABB-BBABABBAB-BABA--BBAABBBABA BBBBAAB-ABABBAAAB-BAAABBBABBBAAABBA-AAABBBABBABAAB-BABABA- ABBBABBBAAAABA-B-BBBBBBABBAABA-A

*bdpsrep1 - - - - - - - - - - - - - - - - 1641.2 1633.1 1424.8 1679.5 1709.4 2253.7 2331.9 1675.0 1857.5 1921.3 1729.3 1782.9 1699.0 1654.4 1504.2 1160.4 1237.4 1172.0 1187.8 1198.2 - 1340.1 1341.7 1389.3 1435.0 1318.0 1345.8 1379.8 1296.4 1310.0 1330.1 1247.4 1387.0 1311.6 1404.4 1321.5 1417.3 1367.5 1404.2 1341.2 1407.9 1404.4 1404.9 1282.4 1307.6 1553.5 1358.6 1326.4 - 1347.5 1452.2 1277.6 1328.4 1396.9 1208.2 1357.4 1276.2 1332.2 1303.3 1331.1 1220.4 1265.4 - 1310.9 - - - - - - 1073.0 1112.9 1164.7 1246.2 1237.1 1253.5 1196.8 1208.7 1227.8 1247.4 1225.6 1227.2 1176.5 1217.2 1207.0 1297.2 1270.2 1226.8 1268.0 1200.9 1290.9 1302.9 1233.9 1179.2 1297.6 1285.8 - - - - - 1259.8 1295.1 1265.7 1195.2 1239.1 1263.0 1229.3 1390.6 1254.0 1251.9 1316.5 1295.9 1233.4 1345.8 1265.6 1321.2 1294.0 1227.4 1287.1 1211.1 1321.9 1254.0 1329.7 1301.5 1302.9 1319.8 1294.2 1333.0 1332.5 1326.2 1430.7 1430.3 1469.9

*bdpsrep2 - - - - - - - - - - - - - - - - 1618.6 1629.4 1424.3 1728.8 1681.4 2181.8 2259.1 1658.4 1858.5 1648.5 1723.5 1836.2 1516.4 1693.6 1641.4 1258.9 1290.5 1329.9 1260.5 1178.7 - 1356.0 1372.4 1444.4 1452.2 1409.9 1380.6 1375.0 1326.1 1317.6 1343.6 1234.3 1439.1 1330.5 1430.2 1362.7 1392.5 1395.2 1457.1 1374.4 1415.9 1438.9 1429.7 1302.1 1317.0 1569.7 1401.0 1349.3 - 1373.7 1490.3 1271.7 1323.2 1479.7 1207.2 1328.1 1316.8 1363.0 1336.7 1361.4 1230.9 1257.5 - 1351.5 - - - - - - 1076.4 1154.3 1220.6 1276.7 1312.8 1343.3 1215.0 1313.3 1241.1 1250.2 1271.6 1285.5 1206.3 1276.2 1258.2 1361.9 1292.6 1229.6 1279.5 1100.3 1358.9 1244.9 1222.6 1240.0 1319.3 1253.1 - - - - - 1291.8 1267.5 1288.3 1223.7 1233.8 1279.6 1210.5 1360.8 1271.5 1294.5 1323.0 1303.6 1193.8 1289.0 1269.4 1326.8 1295.7 1224.6 1258.5 1254.0 1311.7 1300.8 1245.5 1208.9 1287.1 1283.1 1250.2 1322.4 1294.2 1294.5 1434.5 1378.6 1514.5

*DTH18hr 36 27 26 40 29 37 38.5 27 43.5 40 32 39.5 28 45.5 27.5 39 39.5 24 40 42 26.5 29.5 38 44 42 39 38.5 29.5 28 26.5 40.5 39 36 28.5 24.5 24.5 23.5 23 40 34.5 40.5 34.5 34 40 26.5 28 25 20 42.5 37 27.5 27.5 27.5 26 34 29 43 37 42 23.5 26.5 47.5 25 28 39 25 35.5 27 39.5 37 33 24 24.5 27 - 43.5 27 35 39 25 26.5 26 28 - 44 29 34 30 24 43.5 40 28 33.5 26 40 31 26.5 36 37 42 24 43.5 42 34.5 33 23.5 27 42 28.5 29 34 28 35 27 26.5 27 28.5 28 28 30.5 34 29 27.5 28 41 24.5 27.5 35 44.5 34 25 26.5 39 28.5 28.5 36 25.5 28 27 32.5 31 27 43 26.5 46 42 25.5 42.5 33 26

*PhoPdRes 46 78 115 63 52 51 51.5 110 57.5 44 77 45.5 99 50.5 102.5 51 58.5 85 50 56 89.5 86.5 52 54 48 62 106.5 88.5 90 78.5 64.5 59 54 - 65.5 93.5 74.5 78 51 56.5 50.5 47.5 56 72 82.5 88 78 91 47.5 66 99.5 112.5 71.5 114 57 105 55 47 57 67.5 85.5 42.5 65 70 66 73 54.5 107 50.5 53 60 74 78.5 82 - 47.5 118 42 57 84 110.5 72 75 - 49 74 44 107 64 54.5 48 106 50.5 75 50 85 85.5 45 59 48 61 44.5 46 63.5 57 64.5 100 54 134.5 61 56 73 53 76 91.5 91 111.5 56 68 90.5 48 83 102.5 75 68 73.5 53.5 -35 45.5 41 71 76.5 59 92.5 101.5 57 79.5 102 71 79.5 87 113 60 82.5 52 67 104.5 66.5 101 84

*aa1 37.4 28.0 36.2 25.3 25.2 28.2 27.1 28.3 33.0 28.3 30.0 28.5 27.7 32.9 29.7 29.8 29.2 23.5 26.4 26.4 28.6 37.5 30.1 30.2 30.8 29.1 28.1 22.2 24.8 30.8 24.4 30.1 32.0 27.6 36.1 21.7 34.3 27.7 19.0 24.3 24.1 28.9 27.8 15.4 30.6 26.2 22.9 25.1 28.0 26.9 17.2 21.4 39.1 26.4 26.0 22.1 27.5 23.1 27.5 30.5 33.1 37.8 42.8 24.7 28.3 27.6 27.9 28.0 27.1 26.9 34.4 27.3 28.5 29.7 31.9 30.9 31.0 32.5 32.3 35.9 31.7 28.4 30.9 24.7 22.8 35.6 48.6 31.1 32.0 24.4 25.8 26.8 28.4 33.9 26.9 27.1 29.2 26.0 27.0 28.6 38.3 27.0 30.0 30.8 33.2 36.8 23.1 28.4 21.5 42.7 32.7 37.7 33.0 28.8 32.4 26.6 26.3 23.4 38.1 29.5 28.2 29.4 26.1 25.2 21.9 26.6 25.3 31.0 42.8 26.7 28.7 26.8 20.3 25.9 24.0 25.2 27.5 26.7 35.2 27.7 40.4 32.3 24.8 25.7 22.7 30.5 20.9 23.5 29.9 32.4

*aa4 28.9 25.0 26.0 25.6 24.5 28.2 27.7 25.6 32.0 36.4 25.7 26.6 32.7 33.3 30.6 35.1 28.9 26.6 32.8 35.1 30.3 26.7 27.4 31.6 31.3 31.4 31.3 25.5 23.3 28.7 24.4 28.8 34.4 23.9 27.3 24.2 34.3 26.4 25.9 29.2 33.0 33.4 30.8 25.3 24.3 24.3 27.0 26.1 29.2 28.3 23.3 21.1 23.7 26.1 31.2 21.1 30.6 27.8 26.8 35.3 26.7 29.8 31.7 22.7 26.1 25.8 29.2 27.3 24.9 26.2 30.6 26.9 28.2 26.1 33.9 24.0 30.5 32.6 30.2 31.8 26.1 27.5 26.1 25.4 25.4 27.8 39.4 23.7 30.9 28.9 28.6 25.1 32.3 29.9 31.7 21.7 21.7 27.3 28.9 29.3 32.3 25.9 34.7 34.6 35.8 35.1 27.8 27.3 29.1 31.0 34.1 33.4 35.4 32.3 32.9 26.7 29.8 26.1 24.9 26.8 26.2 26.2 31.1 28.0 23.7 33.6 31.3 30.8 31.3 27.6 25.6 25.3 25.7 27.0 26.4 31.9 27.4 25.6 24.3 22.5 30.5 25.3 27.0 24.6 28.0 29.0 24.9 24.9 24.9 24.3

*dp1 95.00 68.00 70.00 71.00 60.00 84.00 64.00 74.00 98.00 95.00 105.00 81.00 105.00 85.00 74.00 71.00 73.00 64.00 78.00 72.00 68.00 107.00 80.00 59.00 75.00 58.00 80.00 55.00 71.00 69.00 57.00 70.00 55.00 62.00 89.00 72.00 83.00 99.00 50.00 49.00 74.00 103.00 75.00 55.00 111.00 60.00 68.00 68.00 101.00 69.00 49.00 49.00 94.00 62.00 59.00 86.00 61.00 81.00 52.00 77.00 90.00 78.00 122.00 86.00 82.00 85.00 65.00 76.00 52.00 68.00 61.00 73.00 88.00 75.00 95.00 76.00 94.00 72.00 82.00 105.00 77.00 84.00 69.00 70.00 69.00 76.00 99.00 81.00 90.00 74.00 92.00 63.00 65.00 87.00 77.00 49.00 105.00 77.00 61.00 54.00 97.00 70.00 72.00 78.00 87.00 117.00 61.00 88.00 63.00 91.00 91.00 103.00 123.00 97.00 100.00 74.00 55.00 49.00 101.00 79.00 77.00 66.00 55.00 63.00 84.00 87.00 93.00 59.00 127.00 60.00 80.00 58.00 35.00 61.00 46.00 55.00 64.00 65.00 84.00 80.00 92.00 77.00 55.00 78.00 50.00 82.00 46.00 74.00 65.00 69.00

*dp4 58.00 57.00 54.00 57.00 52.00 56.00 60.00 65.00 88.00 106.00 49.00 76.00 86.00 96.00 70.00 62.00 41.00 53.00 84.00 84.00 88.00 72.00 80.00 57.00 53.00 53.00 84.00 54.00 48.00 55.00 40.00 66.00 62.00 50.00 52.00 62.00 60.00 71.00 63.00 58.00 94.00 151.00 73.00 57.00 66.00 52.00 62.00 60.00 71.00 68.00 51.00 41.00 56.00 55.00 65.00 81.00 86.00 71.00 52.00 69.00 65.00 49.00 95.00 78.00 67.00 61.00 56.00 72.00 52.00 79.00 61.00 76.00 76.00 61.00 108.00 60.00 92.00 87.00 64.00 83.00 58.00 77.00 63.00 71.00 48.00 63.00 99.00 49.00 78.00 89.00 79.00 49.00 99.00 78.00 93.00 45.00 79.00 90.00 62.00 55.00 80.00 56.00 106.00 80.00 93.00 82.00 62.00 73.00 78.00 68.00 90.00 59.00 104.00 96.00 72.00 61.00 73.00 50.00 55.00 67.00 63.00 54.00 63.00 59.00 65.00 89.00 95.00 71.00 72.00 49.00 69.00 51.00 55.00 59.00 55.00 61.00 64.00 53.00 60.00 47.00 66.00 57.00 66.00 64.00 65.00 71.00 56.00 59.00 59.00 63.00

*hd1 156.50 149.50 150.00 157.00 149.50 161.00 164.00 148.50 163.50 161.50 155.50 155.50 149.00 161.00 149.50 158.00 158.50 144.50 158.00 160.00 145.00 148.50 157.50 160.50 158.50 158.50 155.50 150.00 149.50 146.00 156.50 157.50 158.50 149.50 147.00 148.50 144.00 148.50 159.50 156.00 158.00 152.00 156.00 159.00 149.50 149.50 148.50 143.00 161.50 154.50 149.50 149.00 147.50 148.50 155.50 154.50 159.00 159.50 161.00 146.50 149.50 163.00 148.00 148.50 163.00 147.50 158.50 151.50 159.00 159.50 151.50 147.00 146.00 150.00 154.00 164.00 149.50 156.50 161.00 146.00 149.00 150.00 150.00 159.00 162.50 148.00 151.50 150.00 144.50 157.00 157.50 149.00 148.50 147.00 158.00 159.00 145.50 157.00 155.00 158.50 143.00 165.00 159.50 156.50 158.00 144.00 150.00 164.00 148.50 148.00 150.00 149.50 148.00 148.00 147.50 148.00 149.50 151.00 148.50 149.50 156.00 149.50 150.00 150.00 163.00 157.50 149.00 151.50 162.50 154.00 144.50 149.00 156.50 148.50 153.00 159.00 145.00 149.50 146.00 150.00 148.50 149.00 154.50 148.00 162.50 160.00 147.50 164.50 150.00 149.00

*hd2 178.00 176.50 175.00 182.00 170.50 182.00 182.00 171.00 183.50 182.00 172.50 185.50 174.00 185.00 174.50 178.00 182.00 170.00 182.00 182.00 169.50 175.00 182.00 183.50 182.00 180.00 178.00 175.00 174.50 169.50 180.00 180.00 182.00 174.50 169.00 174.50 169.50 171.00 182.00 180.00 180.00 178.50 178.00 183.50 175.00 175.00 175.00 169.00 182.00 178.00 175.00 176.50 173.00 175.00 175.00 178.00 182.00 182.00 183.50 170.00 176.00 182.00 169.50 176.50 183.50 174.50 178.00 178.00 182.00 182.00 174.50 171.00 169.00 175.00 178.00 185.00 175.00 182.00 185.00 169.00 174.50 175.00 175.00 182.00 182.00 174.50 176.50 174.50 169.00 182.00 182.00 172.50 178.00 172.50 182.00 182.00 169.50 180.00 178.00 180.00 170.00 185.00 182.00 178.00 178.00 169.00 175.00 185.00 174.50 171.00 175.00 174.50 180.00 177.00 174.00 172.50 176.50 176.50 172.50 175.00 178.00 175.50 175.00 175.00 183.50 172.50 175.00 175.00 182.00 177.00 171.00 174.50 180.00 174.50 178.00 182.00 169.00 175.00 169.00 176.50 174.50 174.00 178.00 172.50 182.00 182.00 174.50 185.00 175.00 174.50

*ht1 113.50 94.50 88.00 107.50 77.00 113.50 119.00 96.50 112.00 106.50 110.50 97.50 71.50 107.50 80.50 94.00 105.00 96.00 95.00 113.00 89.50 82.00 90.50 114.50 103.00 102.00 108.00 88.00 94.00 80.50 102.00 92.50 112.00 102.50 75.00 93.50 86.50 84.00 102.50 105.50 113.00 93.00 103.00 107.00 91.00 89.50 93.00 84.50 116.00 91.50 92.50 90.50 71.00 81.00 88.00 95.00 109.00 107.50 96.50 94.00 94.50 119.00 73.00 87.00 98.50 75.50 103.50 80.00 121.00 108.00 88.50 89.50 94.00 82.00 98.50 99.00 92.50 113.00 103.00 74.50 84.00 86.00 90.00 123.50 101.50 72.50 90.50 97.00 83.00 106.00 124.50 83.50 96.00 91.00 98.00 109.00 85.00 92.50 109.50 116.50 85.50 110.50 117.00 94.00 107.00 69.50 88.50 105.50 99.50 81.00 107.00 88.00 86.50 96.00 81.00 85.50 88.50 91.00 80.50 85.00 107.50 81.50 86.00 102.50 122.50 107.00 99.50 108.00 120.50 104.50 75.00 86.00 98.00 80.50 83.50 121.50 76.00 79.00 70.00 84.50 82.50 84.50 102.50 91.50 95.00 106.00 85.50 120.50 99.50 95.50

*ht2 85.00 82.50 85.00 95.00 75.00 107.50 102.50 95.00 92.50 92.50 85.00 82.50 60.00 85.00 90.00 75.00 87.50 87.50 90.00 87.50 77.50 80.00 90.00 105.00 100.00 87.50 85.00 77.50 87.50 75.00 85.00 92.50 87.50 97.50 70.00 87.50 85.00 87.50 80.00 85.00 100.00 92.50 87.50 97.50 87.50 92.50 85.00 77.50 82.50 87.50 77.50 75.00 80.00 80.00 77.50 90.00 87.50 102.50 77.50 85.00 95.00 107.50 75.00 70.00 77.50 77.50 95.00 70.00 102.50 87.50 90.00 85.00 87.50 80.00 75.00 100.00 87.50 100.00 90.00 80.00 85.00 87.50 85.00 107.50 90.00 80.00 85.00 92.50 80.00 90.00 100.00 90.00 92.50 90.00 85.00 100.00 77.50 90.00 87.50 92.50 72.50 87.50 95.00 80.00 77.50 80.00 90.00 97.50 95.00 75.00 82.50 77.50 97.50 77.50 90.00 85.00 80.00 80.00 90.00 82.50 90.00 95.00 75.00 90.00 110.00 80.00 80.00 90.00 95.00 90.00 72.50 85.00 80.00 85.00 67.50 87.50 72.50 77.50 80.00 82.50 75.00 75.00 87.50 85.00 87.50 97.50 87.50 97.50 85.00 87.50

*lg2 5.0 30.0 30.0 0.0 10.0 5.0 0.0 70.0 0.0 0.0 25.0 15.0 0.0 0.0 45.0 0.0 20.0 35.0 0.0 5.0 20.0 0.0 0.0 10.0 20.0 10.0 10.0 5.0 10.0 10.0 20.0 0.0 0.0 35.0 5.0 30.0 15.0 10.0 0.0 15.0 0.0 0.0 0.0 0.0 35.0 10.0 35.0 0.0 0.0 10.0 15.0 10.0 0.0 5.0 5.0 30.0 0.0 0.0 0.0 40.0 40.0 0.0 10.0 10.0 0.0 30.0 0.0 15.0 0.0 0.0 20.0 20.0 10.0 15.0 5.0 0.0 45.0 15.0 5.0 15.0 15.0 20.0 30.0 15.0 5.0 15.0 20.0 30.0 10.0 0.0 10.0 30.0 25.0 35.0 0.0 10.0 10.0 20.0 0.0 10.0 0.0 0.0 0.0 50.0 0.0 10.0 30.0 5.0 50.0 35.0 0.0 5.0 15.0 5.0 55.0 35.0 25.0 25.0 30.0 30.0 20.0 35.0 20.0 45.0 10.0 15.0 20.0 15.0 10.0 20.0 15.0 15.0 5.0 20.0 10.0 0.0 0.0 35.0 25.0 10.0 10.0 25.0 0.0 10.0 0.0 0.0 15.0 10.0 15.0 5.0

*lg3 80.0 50.0 10.0 30.0 30.0 60.0 0.0 70.0 0.0 60.0 0.0 0.0 0.0 50.0 70.0 0.0 70.0 60.0 20.0 0.0 70.0 60.0 0.0 70.0 60.0 0.0 20.0 0.0 0.0 60.0 90.0 50.0 0.0 50.0 0.0 70.0 0.0 0.0 0.0 50.0 0.0 0.0 70.0 0.0 40.0 50.0 50.0 50.0 40.0 40.0 40.0 70.0 70.0 0.0 0.0 80.0 60.0 0.0 0.0 0.0 50.0 20.0 0.0 80.0 0.0 80.0 50.0 0.0 50.0 0.0 60.0 70.0 40.0 50.0 20.0 30.0 60.0 30.0 0.0 80.0 0.0 0.0 80.0 50.0 0.0 0.0 40.0 70.0 30.0 0.0 50.0 80.0 80.0 70.0 0.0 70.0 20.0 20.0 50.0 0.0 0.0 0.0 20.0 50.0 60.0 0.0 0.0 0.0 40.0 40.0 20.0 0.0 50.0 0.0 60.0 80.0 30.0 0.0 0.0 70.0 0.0 70.0 70.0 70.0 30.0 20.0 70.0 50.0 40.0 0.0 0.0 20.0 0.0 80.0 30.0 50.0 0.0 80.0 0.0 30.0 0.0 70.0 0.0 30.0 70.0 20.0 50.0 0.0 60.0 0.0

*me1 72.60 73.60 76.00 73.30 74.50 71.60 76.40 72.60 77.20 76.80 75.90 76.00 75.40 78.30 77.30 74.10 69.60 77.10 74.10 76.00 75.80 77.40 78.20 77.50 75.70 74.10 75.30 75.10 75.60 76.60 71.50 77.90 78.80 74.80 75.90 76.50 75.20 75.50 78.10 77.00 75.10 79.10 77.60 73.70 75.20 74.60 75.60 74.20 71.00 75.60 73.60 73.20 78.60 76.20 76.60 73.70 77.90 76.70 79.10 75.60 76.10 75.60 83.00 75.50 77.30 74.90 76.00 75.00 75.50 78.20 78.10 74.90 75.90 76.20 75.90 74.20 75.30 75.70 75.50 76.60 73.80 76.40 74.30 74.60 72.40 77.60 82.60 74.70 75.30 75.90 75.10 73.40 76.90 79.20 75.50 80.40 72.30 74.60 77.70 78.60 77.80 74.40 77.90 74.60 76.10 76.60 73.20 74.20 75.80 77.40 76.40 77.50 75.80 73.90 75.60 74.10 74.50 74.60 76.60 75.40 76.10 76.70 76.70 72.30 71.60 76.80 74.90 78.50 73.10 74.10 73.90 74.80 75.30 75.60 74.50 75.00 74.50 71.80 75.80 76.50 78.00 76.90 77.40 74.60 75.80 73.80 76.10 76.70 76.10 76.00

*me4 74.80 71.30 72.70 71.10 73.80 74.20 74.00 72.40 76.90 75.50 74.50 73.80 75.50 74.70 74.00 74.80 75.60 73.30 75.10 75.50 72.00 73.40 73.80 73.70 74.10 73.30 71.40 72.30 72.50 74.10 71.90 73.10 75.50 72.60 72.90 74.00 73.60 74.80 75.10 74.60 74.70 74.10 72.70 73.20 72.60 72.50 75.20 74.20 74.90 75.00 71.90 71.90 71.90 73.20 74.90 72.40 74.20 75.00 74.70 73.90 73.60 74.30 71.60 71.60 72.50 74.00 74.20 74.00 72.60 73.70 74.90 71.50 74.50 73.50 72.70 72.40 75.00 73.30 75.80 74.10 70.80 73.30 73.70 72.70 73.60 73.60 77.80 71.70 75.60 74.60 74.00 73.80 76.70 74.80 75.20 72.60 72.10 74.60 76.80 75.70 75.60 74.20 74.30 74.70 75.90 76.30 73.70 71.80 74.50 73.40 74.50 76.30 76.30 74.50 76.10 73.80 75.20 73.50 72.80 73.10 74.40 72.70 75.00 72.30 71.30 76.60 75.10 74.10 75.00 74.30 72.00 73.20 73.10 75.00 75.20 73.70 72.60 74.20 72.30 74.60 76.40 74.90 75.90 73.80 74.00 73.50 74.90 76.60 74.90 71.90

*bp1 16.3 11.5 12.5 13.9 11.2 14.6 9.4 12.5 11.0 13.3 13.5 12.5 13.0 10.6 8.9 13.0 14.0 11.7 13.0 10.2 9.9 12.5 9.4 9.9 11.6 12.8 14.2 12.2 12.7 10.0 14.0 10.5 10.0 12.5 13.3 11.2 14.7 14.6 9.7 9.7 13.4 11.2 13.2 12.6 11.6 11.5 11.2 11.9 14.8 11.6 11.5 12.0 10.4 11.2 12.3 12.6 9.8 11.6 8.7 13.3 12.6 11.6 14.7 12.2 12.2 12.7 12.4 11.5 12.5 9.4 9.8 11.3 12.4 9.8 14.9 13.3 12.0 13.0 12.1 10.3 13.5 11.4 12.0 12.1 13.5 9.3 9.3 12.9 12.8 11.7 11.6 11.6 10.6 10.5 11.4 8.3 14.9 13.3 10.6 9.0 11.9 13.9 10.1 13.0 13.4 14.2 11.4 13.2 10.6 12.1 12.9 12.2 15.4 14.5 11.5 13.1 11.5 9.7 13.4 10.0 13.4 10.4 10.6 12.3 12.8 12.8 12.6 9.6 14.6 13.1 13.7 11.3 11.5 12.2 10.5 13.8 13.5 12.6 13.2 11.3 12.0 12.8 11.0 14.1 13.5 14.7 12.0 11.1 11.7 13.2

*bp4 11.1 11.5 12.1 14.6 11.2 10.6 11.1 11.3 13.6 13.6 10.1 10.5 10.9 12.0 10.2 13.1 10.6 11.6 11.5 10.4 13.2 12.1 13.5 11.3 10.9 12.3 14.6 11.3 12.6 11.8 11.5 13.3 12.7 12.3 13.6 10.9 13.4 11.2 12.1 11.1 13.3 16.4 13.4 12.3 11.5 12.3 10.7 12.3 10.9 11.8 10.7 10.7 12.3 11.9 12.4 11.5 11.7 11.4 11.2 12.8 11.0 11.5 14.5 12.6 13.4 10.6 12.2 11.2 12.7 13.0 12.3 12.7 12.1 10.8 15.8 12.3 11.2 13.6 10.9 11.2 13.3 12.6 11.4 12.2 10.9 12.3 11.9 12.7 11.7 11.7 10.5 10.4 11.6 10.1 10.8 10.7 12.9 11.5 10.0 10.4 11.5 12.0 12.1 11.9 12.2 11.3 8.8 12.1 10.5 11.0 11.7 9.6 11.9 9.7 9.0 10.3 11.1 9.4 10.7 9.6 11.0 10.6 9.8 9.6 11.1 10.3 9.7 10.5 9.5 10.4 11.6 9.8 11.9 9.5 9.7 11.7 11.8 8.0 11.8 9.6 9.7 8.7 10.3 11.2 13.3 12.2 10.7 9.5 9.0 13.0

*yld1 4610.80 5159.00 4701.60 5296.90 4883.30 4681.50 4930.30 4691.60 5411.30 5041.30 5108.60 5643.30 4923.60 5145.60 4452.80 5031.20 3279.00 5582.80 5488.60 4520.00 4436.00 5001.00 6275.60 4072.70 3114.30 4859.70 5401.20 6117.50 4846.30 3860.90 4143.40 5175.80 4735.30 4678.10 4341.80 4651.20 4311.50 5824.90 5929.20 5192.70 4308.20 4567.10 5296.90 5942.60 5747.60 6009.90 5683.70 5034.60 3797.00 5683.70 5872.00 5744.20 4160.20 4489.80 6057.00 5616.40 5273.40 5572.70 4079.50 5192.70 5125.40 3813.80 4832.80 6077.20 5438.20 4072.70 4701.60 5179.20 4701.60 5730.80 4415.80 5276.70 5290.20 4960.60 4136.60 2441.60 5088.40 4967.30 3719.60 4671.40 4970.70 5626.50 5159.00 4459.50 5680.30 4510.00 4039.10 5048.10 4587.30 5381.00 4775.60 5148.90 5798.00 4281.30 5845.10 4136.60 4469.60 5710.60 5626.50 5259.90 4856.40 4382.20 5239.70 4563.80 4362.00 5108.60 4896.70 4099.60 5165.80 5286.80 5199.40 5337.30 3598.50 4641.10 4029.00 5394.50 5804.80 5861.90 5085.00 4140.00 5549.20 4789.10 5508.80 4869.80 3531.30 5212.80 5263.30 4129.90 3195.00 4264.40 3719.60 5421.40 6009.90 5290.20 4906.80 4738.60 5122.00 3931.50 2596.30 5687.00 5219.60 5031.20 6009.90 4610.80 5616.40 3790.20 5370.90 3390.00 5293.60 5522.30

*yld2 6836.70 5791.70 6108.30 6028.30 6723.30 5698.30 5550.00 5271.70 7665.00 5716.70 6523.30 5218.30 7323.30 5693.30 7215.00 4255.00 5453.30 5270.00 6275.00 5050.00 5518.30 5530.00 6256.70 4891.70 5133.30 5361.70 4276.70 5951.70 5091.70 5095.00 4868.30 6575.00 5311.70 5608.30 5343.30 5775.00 4380.00 6356.70 6223.30 5348.30 4615.00 4435.00 5455.00 6163.30 4301.70 5741.70 5436.70 4965.00 5573.30 6118.30 6540.00 5271.70 4461.70 6460.00 6576.70 5670.00 5731.70 5341.70 5743.30 5765.00 5466.70 5378.30 5346.70 5096.70 5926.70 6190.00 6283.30 6370.00 5818.30 5691.70 5550.00 5058.30 5506.70 6400.00 4616.70 4365.00 5905.00 5335.00 6021.70 6401.70 5288.30 6643.30 6713.30 4711.70 6431.70 6880.00 6005.00 6130.00 5600.00 5816.70 5381.70 6183.30 5661.70 6363.30 6056.70 5681.70 5291.70 6936.70 6820.00 6858.30 4433.30 4491.70 5973.30 6110.00 4768.30 5783.30 6345.00 6601.70 6568.30 6861.70 5503.30 6646.70 5808.30 6366.70 6365.00 6370.00 6473.30 6538.30 5198.30 5555.00 5386.70 5065.00 7206.70 7763.30 5168.30 4945.00 5201.70 5401.70 5381.70 5938.30 4556.70 7088.30 4991.70 6040.00 5763.30 4811.70 4936.70 5596.70 5915.00 5568.30 6561.70 5186.70 6330.00 5741.70 4421.70 5761.70 5775.00 6413.30 6050.00 5500.00 ************************************************************************ * Output from: Wed Sep 20 19:33:46 1995 * * * * MAPMAKER/EXP * * (version 3.0b) * * * ************************************************************************

data from 'SM434.DAT' are loaded

F2 backcross data (150 individuals, 434 loci)

'photo' is on: file is 'WEDNIGHT.OUT'

7> group 9.0

Linkage Groups at min LOD 9.00, max Distance 50.0

group1= ABG452 iPgd2 Hor1 Hor2 Ica1 Cab2 ABC307A BCD351C WG789B Chs3

CDO99 Pcr2

ksuF2A ABG373 ABG464 BCD98 Hor5 Glb1 ABC152B His4A Dor2 ABC160 Aga7

CDO105B

ABC164 ABG494 Act8 ABA002 ABA004 Aga6 ABG387a ABG022B ABG500a ABR337

ABG702

His3B MWG800 RisBPP16 ABG059 AtpbA ABC257 cMWG733 cMWG706a MWG706B

MWG837 MWG912

ABC261 ABG074 ABG055 MWG635C ABC322B BCD340A MWG938 MWG042A

KFP153B

8> group 9.0 20

error in sequence: that group is not defined

9> sequence group1

sequence #20= group1

10> group 9.0 25

Linkage Groups at min LOD 9.00, max Distance 25.0

group1= ABG452 iPgd2 Hor1 Hor2 Ica1 Cab2 ABC307A BCD351C WG789B Chs3

CDO99 Pcr2

ksuF2A ABG373 ABG464 BCD98 Hor5 Glb1 ABC152B His4A Dor2 ABC160 Aga7

CDO105B

ABC164 ABG494 Act8 ABA002 ABA004 Aga6 ABG387a ABG022B ABG500a ABR337

ABG702

His3B MWG800 RisBPP16 ABG059 AtpbA ABC257 cMWG733 cMWG706a MWG706B

MWG837 MWG912

ABC261 ABG074 ABG055 MWG635C ABC322B BCD340A MWG938 MWG042A

KFP153B -------

group2= Rrn1 ABG466 ABG474 WG223b ABC152A ABG20 Nir ABG378 ABG379

ABC163 ABA006

ABR331 ABC169B Ubi4 ABC170A ABC170B ABR335 ABG387b ABG388 ABG001

ABC175 His3D

Ubi5 ABG062 MWG820 MWG620 cMWG652a bBE54B B12DA BCD340E CDO497

MWG934 MWG663_2

MWG684A MWG684B

11> sequence group1

sequence #21= group1

12> order

Linkage Groups at min LOD 3.00, max Distance 50.0

Starting Orders: Size 5, Log-Likelihood 3.00, Searching up to 50 subsets

Informativeness: min #Individuals 1, min Distance 0.9

Placement Threshold-1 3.00, Threshold-2 2.00, Npt-Window 7 ==================================================================== ===========

Linkage group 1, 55 Markers:

7 ABG452 20 iPgd2 29 Hor1 30 Hor2 33 Ica1

48 Cab2 49 ABC307A 56 BCD351C 59 WG789B 65 Chs3

78 CDO99 81 Pcr2 85 ksuF2A 92 ABG373 96 ABG464

115 BCD98 138 Hor5 141 Glb1 149 ABC152B 156 His4A

160 Dor2 175 ABC160 177 Aga7 192 CDO105B 196 ABC164

199 ABG494 203 Act8 206 ABA002 207 ABA004 228 Aga6

235 ABG387a 247 ABG022B 270 ABG500a 273 ABR337 278 ABG702

284 His3B 304 MWG800 317 RisBPP16 332 ABG059 340 AtpbA

342 ABC257 356 cMWG733 358 cMWG706a 359 MWG706B 363 MWG837

365 MWG912 367 ABC261 370 ABG074 373 ABG055 378 MWG635C

394 ABC322B 395 BCD340A 407 MWG938 411 MWG042A 432 KFP153B

Most informative subset: 432 20 407 373 33 48 49 370 358 65 356 367 411 92 96

115 394 141 332 156 340 175 177 192 196 317 304 206 207 228 235 247 270 273 278

284

Searching for a unique starting order containing 5 of 36 informative loci...

Got one at log-likelihood 12.11

Placing at log-likelihood threshold 3.00...

Start: 247 175 156 284 358

Npt-13: 247 (160) 175 156 284 358

Npt-22: 247 (304) 160 175 156 284 358

Npt-13: 247 304 (141) 160 175 156 284 358

Npt-3: 247 304 141 160 175 156 284 (49) 358

Npt-33: 247 (273) 304 141 160 175 156 284 49 358

Npt-End: (196) 247 273 304 141 160 175 156 284 49 358

Npt-3: 196 (149) 247 273 304 141 160 175 156 284 49 358

Npt-4: 196 149 (317) 247 273 304 141 160 175 156 284 49 358

Npt-31: 196 149 317 (81) 247 273 304 141 160 175 156 284 49 358

Npt-End: 196 149 317 81 247 273 304 141 160 175 156 284 49 358 (356)

Npt-8: 196 149 317 81 247 273 304 141 160 175 156 284 49 358 (20) 356

Npt-End: 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20 356 (365)

Npt-4: 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20 356 (206) 365

Npt-13: 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20 356 (394) 206

365

Npt-11: 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20 356 (340) 394

206 365

Npt-16: 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20 356 340 (278)

394 206 365

Npt-20: 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20 356 340 278

394 206 (177) 365

Npt-23: 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20 356 340 278

394 206 (48) 177 365

Npt-End: (270) 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20 356 340

278 394 206 48 177 365

Npt-End: (115) 270 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20 356

340 278 394 206 48 177 365

Npt-15: 115 (33) 270 196 149 317 81 247 273 304 141 160 175 156 284 49 358 20

356 340 278 394 206 48 177 365

Npt-End: (29) 115 33 270 196 149 317 81 247 273 304 141 160 175 156 284 49 358

20 356 340 278 394 206 48 177 365

Npt-10: 29 (78) 115 33 270 196 149 317 81 247 273 304 141 160 175 156 284 49

358 20 356 340 278 394 206 48 177 365

Npt-20: 29 (207) 78 115 33 270 196 149 317 81 247 273 304 141 160 175 156 284

49 358 20 356 340 278 394 206 48 177 365

Npt-20: 29 (65) 207 78 115 33 270 196 149 317 81 247 273 304 141 160 175 156

284 49 358 20 356 340 278 394 206 48 177 365 *** break ***

13>

13>

13> list loci Error Linkage Haplotype

Num Name Genotypes Prob Chrom Group Group Class New?

7 ABG452 143 1.00% - group1 - - -

20 iPgd2 150 1.00% - group1 - - -

29 Hor1 149 1.00% - group1 - - -

30 Hor2 143 1.00% - group1 - - -

33 Ica1 143 1.00% - group1 - - -

48 Cab2 125 1.00% - group1 - - -

49 ABC307A 150 1.00% - group1 - - -

56 BCD351C 149 1.00% - group1 - - -

59 WG789B 149 1.00% - group1 - - -

65 Chs3 117 1.00% - group1 - - -

78 CDO99 139 1.00% - group1 - - -

81 Pcr2 133 1.00% - group1 - - -

85 ksuF2A 117 1.00% - group1 - - -

92 ABG373 148 1.00% - group1 - - -

96 ABG464 145 1.00% - group1 - - -

115 BCD98 150 1.00% - group1 - - -

138 Hor5 141 1.00% - group1 - - -

141 Glb1 150 1.00% - group1 - - -

149 ABC152B 149 1.00% - group1 - - -

156 His4A 134 1.00% - group1 - - -

160 Dor2 145 1.00% - group1 - - -

175 ABC160 147 1.00% - group1 - - -

177 Aga7 135 1.00% - group1 - - -

192 CDO105B 90 1.00% - group1 - - -

196 ABC164 149 1.00% - group1 - - -

199 ABG494 145 1.00% - group1 - - -

203 Act8 145 1.00% - group1 - - -

206 ABA002 146 1.00% - group1 - - -

207 ABA004 122 1.00% - group1 - - -

228 Aga6 83 1.00% - group1 - - -

235 ABG387a 131 1.00% - group1 - - -

247 ABG022B 141 1.00% - group1 - - -

270 ABG500a 146 1.00% - group1 - - -

273 ABR337 129 1.00% - group1 - - -

278 ABG702 143 1.00% - group1 - - -

284 His3B 141 1.00% - group1 - - -

304 MWG800 145 1.00% - group1 - - -

317 RisBPP16 148 1.00% - group1 - - -

332 ABG059 142 1.00% - group1 - - -

340 AtpbA 150 1.00% - group1 - - -

342 ABC257 144 1.00% - group1 - - -

356 cMWG733 150 1.00% - group1 - -

358 cMWG706a 146 1.00% - group1 - - -

359 MWG706B 88 1.00% - group1 - - -

363 MWG837 146 1.00% - group1 - - -

365 MWG912 148 1.00% - group1 - - -

367 ABC261 148 1.00% - group1 - - -

370 ABG074 115 1.00% - group1 - - -

373 ABG055 99 1.00% - group1 - - -

378 MWG635C 124 1.00% - group1 - - -

394 ABC322B 147 1.00% - group1 - - -

395 BCD340A 133 1.00% - group1 - - -

407 MWG938 150 1.00% - group1 - - -

411 MWG042A 147 1.00% - group1 - - -

432 KFP153B 99 1.00% - group1 - - -

14> sequence 29 65 207 78 115 33 270 196 149 317 81 247 273 304 141 160 175 156

284

49 358 20 356 340 278 394 206 48 177 365

sequence #22= 29 65 207 78 115 33 270 196 149 317 81 247 273 304 141 160 175 156

284 49 358 20 356 340 278 394 206 48 177 365

15> map ==================================================================== ===========

Map:

Markers Distance

29 Hor1 0.0 cM

65 Chs3 7.7 cM

207 ABA004 10.9 cM

78 CDO99 0.0 cM

115 BCD98 12.0 cM

33 Ica1 7.2 cM

270 ABG500a 8.7 cM

196 ABC164 1.4 cM

149 ABC152B 1.4 cM

317 RisBPP16 2.0 cM

81 Pcr2 0.0 cM

247 ABG022B 3.5 cM

273 ABR337 5.7 cM

304 MWG800 2.7 cM

141 Glb1 0.0 cM

160 Dor2 9.0 cM

175 ABC160 14.2 cM

156 His4A 9.0 cM

284 His3B 3.6 cM

49 ABC307A 12.6 cM

358 cMWG706a 7.5 cM

20 iPgd2 4.2 cM

356 cMWG733 6.4 cM

340 AtpbA 2.0 cM

278 ABG702 6.4 cM

394 ABC322B 3.2 cM

206 ABA002 2.4 cM

48 Cab2 3.2 cM

177 Aga7 2.4 cM

365 MWG912 ----------

149.3 cM 30 markers log-likelihood= -369.84 ==================================================================== ===========

16> make chromosome chrom5a

chromosomes defined: leah1a chrom5a

17> anchor chrom5a

Hor1 - anchor locus on chrom5a

Chs3 - anchor locus on chrom5a

ABA004 - anchor locus on chrom5a

CDO99 - anchor locus on chrom5a

BCD98 - anchor locus on chrom5a

Ica1 - anchor locus on chrom5a

ABG500a - anchor locus on chrom5a

ABC164 - anchor locus on chrom5a

ABC152B - anchor locus on chrom5a

RisBPP16 - anchor locus on chrom5a

Pcr2 - anchor locus on chrom5a

ABG022B - anchor locus on chrom5a

ABR337 - anchor locus on chrom5a

MWG800 - anchor locus on chrom5a

Glb1 - anchor locus on chrom5a

Dor2 - anchor locus on chrom5a

ABC160 - anchor locus on chrom5a

His4A - anchor locus on chrom5a

His3B - anchor locus on chrom5a

ABC307A - anchor locus on chrom5a

cMWG706a - anchor locus on chrom5a

iPgd2 - anchor locus on chrom5a

cMWG733 - anchor locus on chrom5a

AtpbA - anchor locus on chrom5a

ABG702 - anchor locus on chrom5a

ABC322B - anchor locus on chrom5a

ABA002 - anchor locus on chrom5a

Cab2 - anchor locus on chrom5a

Aga7 - anchor locus on chrom5a

MWG912 - anchor locus on chrom5a

chromosome chrom5a anchor(s): iPgd2 Hor1 Ica1 Cab2 ABC307A Chs3 CDO99 Pcr2

BCD98

Glb1 ABC152B His4A Dor2 ABC160 Aga7 ABC164 ABA002 ABA004 ABG022B

ABG500a ABR337

ABG702 His3B MWG800 RisBPP16 AtpbA cMWG733 cMWG706a MWG912 ABC322B

18> framework chrom5a

setting framework for chromosome chrom5a... ==================================================================== ===========

chrom5a framework:

Markers Distance

29 Hor1 0.0 cM

65 Chs3 7.7 cM

207 ABA004 10.9 cM

78 CDO99 0.0 cM

115 BCD98 12.0 cM

33 Ica1 7.2 cM

270 ABG500a 8.7 cM

196 ABC164 1.4 cM

149 ABC152B 1.4 cM

317 RisBPP16 2.0 cM

81 Pcr2 0.0 cM

247 ABG022B 3.5 cM

273 ABR337 5.7 cM

304 MWG800 2.7 cM

141 Glb1 0.0 cM

160 Dor2 9.0 cM

175 ABC160 14.2 cM

156 His4A 9.0 cM

284 His3B 3.6 cM

49 ABC307A 12.6 cM

358 cMWG706a 7.5 cM

20 iPgd2 4.2 cM

356 cMWG733 6.4 cM

340 AtpbA 2.0 cM

278 ABG702 6.4 cM

394 ABC322B 3.2 cM

206 ABA002 2.4 cM

48 Cab2 3.2 cM

177 Aga7 2.4 cM

365 MWG912 ---------- 149.3 cM 30 markers log-likelihood= -369.84 ==================================================================== ===========

19> save chrom5a

saving genotype data in file 'CHROM5A.DAT'... ok

saving map data in file 'CHROM5A.MAP'... ok

20> sequence 30 56 65 92 96 138 192 199 203 245 247 332 342 359 363 370 373 378 395

407 411 432

sequence #23= 30 56 65 92 96 138 192 199 203 245 247 332 342 359 363 370 373 378

395 407 411 432

21> list loci Error Linkage Haplotype

Num Name Genotypes Prob Chrom Group Group Class New?

30 Hor2 143 1.00% - group1 - - -

56 BCD351C 149 1.00% - group1 - - -

65 Chs3 117 1.00% chrom5a group1 - - -

92 ABG373 148 1.00% - group1 - - -

96 ABG464 145 1.00% - group1 - - -

138 Hor5 141 1.00% - group1 - - -

192 CDO105B 90 1.00% - group1 - - -

199 ABG494 145 1.00% - group1 - - -

203 Act8 145 1.00% - group1 - - -

245 ABG019 128 1.00% - group5 - - -

247 ABG022B 141 1.00% chrom5a group1 - - -

332 ABG059 142 1.00% - group1 - - -

342 ABC257 144 1.00% - group1 - - -

359 MWG706B 88 1.00% - group1 - - -

363 MWG837 146 1.00% - group1 - - -

370 ABG074 115 1.00% - group1 - - -

373 ABG055 99 1.00% - group1 - - -

378 MWG635C 124 1.00% - group1 - - -

395 BCD340A 133 1.00% - group1 - - -

407 MWG938 150 1.00% - group1 - - -

411 MWG042A 147 1.00% - group1 - - -

432 KFP153B 99 1.00% - group1 - - -

22> del 192 359 373 432 370 65 378

sequence #24= 30 56 92 96 138 199 203 245 247 332 342 363 395 407 411

23> order

Linkage Groups at min LOD 3.00, max Distance 50.0

Starting Orders: Size 5, Log-Likelihood 3.00, Searching up to 50 subsets

Informativeness: min #Individuals 1, min Distance 0.9

Placement Threshold-1 3.00, Threshold-2 2.00, Npt-Window 7 ==================================================================== ===========

Linkage group 1, 7 Markers:

30 Hor2 138 Hor5 203 Act8 332 ABG059 363 MWG837

407 MWG938 411 MWG042A

Most informative subset is too small...

Searching for a starting order containing 5 of all 7 loci...

Failed to find a starting order at log-likelihood threshold 3.00. ==================================================================== ===========

Linkage group 2, 7 Markers:

56 BCD351C 92 ABG373 96 ABG464 199 ABG494 247 ABG022B

342 ABC257 395 BCD340A

Most informative subset: 56 92 96 395 247 342

Searching for a unique starting order containing 5 of 6 informative loci...

Failed to find a starting order at log-likelihood threshold 3.00.

Searching for a starting order containing 5 of all 7 loci... *** break ***

24> list chromosomes

Chromosome: #Total #Frame #Anchors #Placed #Unique #Region

leah1a 16 16 0 0 0 0

chrom5a 30 30 0 0 0 0

Total: 46 46 0 0 0 0

25> sequence chrom5a

sequence #25= chrom5a: assigned

26> map ==================================================================== ===========

Map:

Markers Distance

20 iPgd2 94.5 cM

29 Hor1 38.4 cM

33 Ica1 121.5 cM

48 Cab2 53.1 cM

49 ABC307A 127.4 cM

65 Chs3 19.5 cM

78 CDO99 35.6 cM

81 Pcr2 36.4 cM

115 BCD98 47.5 cM

141 Glb1 8.9 cM

149 ABC152B 36.8 cM

156 His4A 24.8 cM

160 Dor2 8.5 cM

175 ABC160 72.2 cM

177 Aga7 119.7 cM

196 ABC164 151.4 cM

206 ABA002 129.7 cM

207 ABA004 59.0 cM

247 ABG022B 10.9 cM

270 ABG500a 15.4 cM

273 ABR337 115.9 cM

278 ABG702 36.9 cM

284 His3B 44.9 cM

304 MWG800 7.7 cM

317 RisBPP16 126.1 cM

340 AtpbA 6.4 cM

356 cMWG733 12.3 cM

358 cMWG706a 44.3 cM

365 MWG912 11.6 cM

394 ABC322B ---------- 1617 cM 30 markers log-likelihood= -1008.00 ==================================================================== ===========

27> sequence 29 65 207 78 115 33 270 196 149 317 81 247 273 304 141 160 175 156

284

49 358 20 356 340 278 394 206 48 177 365

sequence #26= chrom5a: 29 65 207 78 115 33 270 196 149 317 81 247 273 304 141

160 175 156 284 49 358 20 356 340 278 394 206 48 177 365

28> map ==================================================================== ===========

Map:

Markers Distance

29 Hor1 0.0 cM

65 Chs3 7.7 cM

207 ABA004 10.9 cM

78 CDO99 0.0 cM

115 BCD98 12.0 cM

33 Ica1 7.2 cM

270 ABG500a 8.7 cM

196 ABC164 1.4 cM

149 ABC152B 1.4 cM

317 RisBPP16 2.0 cM

81 Pcr2 0.0 cM

247 ABG022B 3.5 cM

273 ABR337 5.7 cM

304 MWG800 2.7 cM

141 Glb1 0.0 cM

160 Dor2 9.0 cM

175 ABC160 14.2 cM

156 His4A 9.0 cM

284 His3B 3.6 cM

49 ABC307A 12.6 cM

358 cMWG706a 7.5 cM

20 iPgd2 4.2 cM

356 cMWG733 6.4 cM

340 AtpbA 2.0 cM

278 ABG702 6.4 cM

394 ABC322B 3.2 cM

206 ABA002 2.4 cM

48 Cab2 3.2 cM

177 Aga7 2.4 cM

365 MWG912 ----------

149.3 cM 30 markers log-likelihood= -369.84 ==================================================================== ===========

29> try 30

Hor2

----------

| 0.00 |

Hor1 | |

|-19.56 |

Chs3 | |

|-12.38 |

ABA004 | |

|-21.46 |

CDO99 | |

|-49.42 |

BCD98 | |

|-35.78 |

Ica1 | |

|-48.29 |

ABG500a | |

|-48.28 |

ABC164 | |

|-62.70 |

ABC152B | |

|-62.69 |

RisBPP16 | |

|-60.90 |

Pcr2 | |

|-65.27 |

ABG022B | |

|-57.24 |

ABR337 | |

|-53.37 |

MWG800 | |

|-59.19 |

Glb1 | |

|-66.07 |

Dor2 | |

|-48.38 |

ABC160 | |

|-42.01 |

His4A | |

|-47.41 |

His3B | |

|-56.78 |

ABC307A | |

|-43.70 |

cMWG706a | |

|-48.64 |

iPgd2 | |

|-55.08 |

cMWG733 | |

|-52.08 |

AtpbA | |

|-60.39 |

ABG702 | |

|-52.12 |

ABC322B | |

|-57.82 |

ABA002 | |

|-59.07 |

Cab2 | |

|-57.22 |

Aga7 | |

|-58.53 |

MWG912 | |

|-22.01 |

|----------|

INF |-22.20 |

----------

BEST -390.69

30> photo

'photo' is on: file is 'WEDNIGHT.OUT'

31> place 30

error: Bad value for multipoint likelihood threshold

32> try 56 92 96

BCD351C ABG373 ABG464 --------------------------------

|-43.03 -41.45 -36.58 |

Hor1 | |

|-81.74 -81.46 -76.62 |

Chs3 | |

|-64.04 -66.53 -61.39 |

ABA004 | |

|-56.11 -63.34 -57.28 |

CDO99 | |

|-71.54 -83.13 -76.81 |

BCD98 | |

|-42.48 -63.53 -55.96 |

Ica1 | |

|-30.49 -69.91 -58.95 |

ABG500a | |

| -6.82 -68.28 -55.17 |

ABC164 | |

| -3.78 -82.11 -67.61 |

ABC152B | |

| 0.00 -82.12 -66.14 |

RisBPP16 | |

| -0.23 -80.40 -64.01 |

Pcr2 | |

| -4.82 -84.77 -69.11 |

ABG022B | |

| -6.76 -76.77 -59.65 |

ABR337 | |

|-15.06 -72.93 -52.66 |

MWG800 | |

|-25.29 -78.88 -54.43 |

Glb1 | |

|-33.23 -85.78 -58.67 |

Dor2 | |

|-25.91 -67.26 -33.93 |

ABC160 | |

|-39.63 -58.80 0.00 |

His4A | |

|-58.41 -62.15 -0.44 |

His3B | |

|-72.32 -71.13 -22.87 |

ABC307A | |

|-62.92 -55.77 -23.37 |

cMWG706a | |

|-71.59 -56.24 -42.88 |

iPgd2 | |

|-77.80 -55.94 -53.62 |

cMWG733 | |

|-74.17 -42.89 -54.57 |

AtpbA | |

|-82.54 -44.01 -65.37 |

ABG702 | |

|-74.31 -31.10 -58.51 |

ABC322B | |

|-79.88 -29.23 -65.27 |

ABA002 | |

|-81.09 -23.35 -68.46 |

Cab2 | |

|-79.10 -10.71 -67.24 |

Aga7 | |

|-80.67 -1.57 -69.07 |

MWG912 | |

|-44.13 0.00 -34.90 |

|--------------------------------|

INF |-44.25 -41.92 -36.76 |

--------------------------------

BEST -370.44 -372.47 -376.72

33> place 56

error: Bad value for multipoint likelihood threshold

34> place 92

error: Bad value for multipoint likelihood threshold

35> place 96

error: Bad value for multipoint likelihood threshold

36> try 138 199 203 245 247

Hor5 ABG494 Act8 ABG019 ABG022B

------------------------------------------------------

| 0.00 -41.96 0.00 -0.07 -41.73 |

Hor1 | |

|-22.00 -80.73 -21.12 -40.39 -80.82 |

Chs3 | |

|-14.32 -63.05 -13.66 -25.64 -63.83 |

ABA004 | |

|-22.07 -55.07 -21.92 -22.69 -56.62 |

HDO99 | |

|-48.47 -70.42 -49.40 -42.75 -72.57 |

BCD98 | |

|-33.78 -42.22 -35.34 -22.92 -43.97 |

Ica1 | |

|-44.93 -30.46 -47.36 -28.80 -32.73 |

ABG500a | |

|-44.93 -6.82 -47.09 -26.94 -12.37 |

ABC164 | |

|-59.50 -3.78 -61.36 -40.56 -11.26 |

ABC152B | |

|-59.44 0.00 -61.36 -40.54 -8.13 |

RisBPP16 | |

|-57.65 -0.23 -59.58 -38.76 zero |

Pcr2 | |

|-62.01 -4.82 -63.94 -43.14 0.00 |

ABG022B | |

|-54.01 -6.76 -55.94 -35.14 zero |

ABR337 | |

|-50.13 -15.05 -52.07 -31.28 -12.87 |

MWG800 | |

|-55.97 -25.28 -57.88 -37.09 -25.55 |

Glb1 | |

|-62.87 -33.22 -64.75 -43.96 -31.57 |

Dor2 | |

|-45.18 -26.03 -47.06 -26.26 -24.73 |

ABC160 | |

|-38.84 -40.54 -40.68 -19.83 -39.58 |

His4A | |

|-44.25 -57.97 -46.09 -25.27 -56.09 |

His3B | |

|-53.66 -71.34 -55.49 -34.69 -70.11 |

ABC307A | |

|-40.89 -61.87 -42.63 -22.29 -61.21 |

cMWG706a | |

|-46.26 -70.47 -47.91 -28.37 -69.70 |

iPgd2 | |

|-52.48 -76.56 -54.22 -34.28 -75.68 |

cMWG733 | |

|-49.16 -72.94 -51.01 -30.44 -72.12 |

AtpbA | |

|-57.39 -81.33 -59.22 -38.65 -80.68 |

AMBG702 | |

|-49.10 -73.12 -50.91 -30.23 -72.55 |

ABC322B | |

|-54.74 -78.74 -56.55 -35.61 -78.11 |

ABA002 | |

|-55.98 -79.93 -57.81 -37.02 -79.32 |

Cab2 | |

|-54.13 -78.02 -55.97 -35.18 -77.35 |

Aga7 | |

|-55.41 -79.57 -57.26 -36.55 -78.91 |

MWG912 | |

|-18.84 -42.97 -20.68 0.00 -42.34 |

|------------------------------------------------------|

INF |-19.03 -43.04 -20.86 -0.06 -42.42 |

------------------------------------------------------

BEST -393.25 -370.44 -392.62 -408.30 -369.86

37> try 342 363 395 407 411

ABC257 MWG837 BCD340A MWG938 MWG042A

------------------------------------------------------

|-41.17 0.00 -37.12 0.00 0.00 |

Hor1 | |

|-80.62 -4.55 -77.24 -21.74 -13.26 |

Chs3 | |

|-65.86 -3.15 -62.62 -14.07 -8.23 |

ABA004 | |

|-62.37 -18.85 -59.70 -22.05 -19.95 |

CDO99 | |

|-82.47 -50.11 -79.69 -49.42 -49.40 |

BCD98 | |

|-63.40 -39.75 -59.88 -35.29 -37.47 |

Ica1 | |

|-69.61 -56.46 -65.85 -47.58 -52.42 |

ABG500a | |

|-67.65 -60.06 -64.10 -47.53 -54.12 |

ABC164 | |

|-81.59 -76.56 -77.88 -61.73 -69.63 |

ABC152B | |

|-81.51 -76.59 -77.92 -61.73 -69.65 |

RisBPP16 | |

|-79.64 -74.69 -76.18 -59.96 -67.82 |

Pcr2 | |

|-84.01 -79.07 -80.51 -64.32 -72.19 |

ABG022B | |

|-75.22 -71.35 -72.46 -56.31 -64.32 |

ABR337 | |

|-70.62 -67.90 -68.56 -52.44 -60.58 |

MWG800 | |

|-76.07 -74.11 -74.46 -58.25 -66.46 |

Glb1 | |

|-82.38 -81.20 -81.36 -65.12 -73.36 |

Dor2 | |

|-61.57 -63.53 -62.95 -47.42 -55.67 |

ABC160 | |

|-45.77 -57.17 -54.20 -41.04 -49.29 |

His4A | |

|-41.61 -62.65 -57.90 -46.45 -54.72 |

His3B | |

|-42.91 -72.12 -67.21 -55.85 -64.12 |

ABC307A | |

|-17.40 -59.46 -51.90 -43.15 -51.18 |

cMWG706a | |

| 0.00 -65.07 -51.79 -48.68 -56.47 |

iPgd2 | |

| -2.51 -71.13 -52.88 -54.82 -62.59 |

cMWG733 | |

|-18.01 -67.76 -39.95 -51.42 -59.43 |

AtpbA | |

|-36.93 -75.98 -40.73 -59.64 -67.65 |

ABG702 | |

|-34.92 -67.64 -28.39 -51.33 -59.21 |

ABC322B | |

|-46.73 -73.20 -26.80 -56.94 -64.75 |

ABA002 | |

|-51.76 -74.36 -23.17 -58.17 -65.83 |

Cab2 | |

|-54.29 -72.35 -10.76 -56.30 -63.91 |

Aga7 | |

|-58.64 -73.66 -1.60 -57.58 -65.25 |

MWG912 | |

|-33.25 -37.19 0.00 -21.01 -29.09 |

|------------------------------------------------------|

INF |-41.91 -37.57 -37.48 -21.22 -29.52 |

------------------------------------------------------

BEST -371.28 -376.22 -372.39 -393.77 -384.57

38> map

====================================================================

===========

Map:

Markers Distance

29 Hor1 0.0 cM

65 Chs3 7.7 cM

207 ABA004 10.9 cM

78 CDO99 0.0 cM

115 BCD98 12.0 cM

33 Ica1 7.2 cM

270 ABG500a 8.7 cM

196 ABC164 1.4 cM

149 ABC152B 1.4 cM

317 RisBPP16 2.0 cM

81 Pcr2 0.0 cM

247 ABG022B 3.5 cM

273 ABR337 5.7 cM

304 MWG800 2.7 cM

141 Glb1 0.0 cM

160 Dor2 9.0 cM

175 ABC160 14.2 cM

156 His4A 9.0 cM

284 His3B 3.6 cM

49 ABC307A 12.6 cM

358 cMWG706a 7.5 cM

20 iPgd2 4.2 cM

356 cMWG733 6.4 cM

340 AtpbA 2.0 cM

278 ABG702 6.4 cM

394 ABC322B 3.2 cM

206 ABA002 2.4 cM

48 Cab2 3.2 cM

177 Aga7 2.4 cM

365 MWG912 ----------

149.3 cM 30 markers log-likelihood= -369.84 ==================================================================== ===========

39> sequence all

sequence #27= all

warning: marker(s) listed in sequence multiple times...

40> group 7.0

warning: marker(s) listed in sequence multiple times... extras deleted

Linkage Groups at min LOD 7.00, max Distance 50.0

group1= Nar1 Nar7 ABG458 Amy1 Lth PSR167B PSR167 PSR154 Cxp3 PSR106

ksuA3B

ksuA3D ksuD17 Rrn1 ABG466 ABG474 WG223b ABC152A ABG20 Nir ABG378

ABG379 ABC163

ABA006 ABR331 ABC169B Ubi4 ABC170A ABC170B ABR335 ABG387b ABG388

ABG001 ABC175

His3D Ubi5 ABG062 MWG820 MWG620 cMWG652a bBE54B B12DA BCD340E

CDO497 MWG934

MWG663_2 MWG684A MWG684B -------

group2= Ale PSR128 ABC302 Ltp1 mSrh ksuA3A BCD351e ksuA1B CDO348B ABG473

WG530

WG541 Rrn2 BG123b CDO749 Adh6 WG364 ABR313 ABC483 WG889 CDO57B

ABA001 ABC168

Ubi2 ABR336 ABG497 Dor5 ABG395 CDO669B ABG705 ABC706 MWG522 ABG708

MWG502 ABC717

ABG316B ABG064 ABG069 B12DB MWG2040B MWG583 MWG042C MWG920_1 -------

group3= Dhn6 Bmy1 ksuH11 BCD351D Pgk2A ABG366 ABR315 BCD265B ABG472

iAco2

WG1026B WG464 BCD402B CDO669 Adh4 ABG484 WG114 BCD453B ABG313B

ABA003 ABG003

ABG498 ABG054 ABG394 ABG397 ABG500b TubA1 WG622 bAL882 ABC303

cMWG652B bAP91

MWG058 bBE54A MWG634 iHxk2 ABG319A ABG319C B32E MWG635a ABC321

MWG077 -------

group4= Glx ABC455 Brz iEst5 Ubi1 Prx1A ABG312 PSR106B WG420 CDO475

WG789A

BCD298B ABC305 ksuA1A His3A Pgk2B ksuD14C BCD129 Amy2 ABG461 ABC465

WG719 PSR129

CDO673 ABG476 Chi1 Adh7 Tha ABC151 ABC154A Plc Dor4B ABC156d ABC158

ABR303

ABR329 ABG380 WG834 WG380A ABC310b Cat3 ABC167a ABC169A dRpg1 ABG011

ABG022A

ABA301 ABC154B ABG701 ABG704 ABG652 MWG010B ABC308 bBE54E RisP103

MWG089 iPgd1A

MWG036B MWG813B MWG706C MWG836 MWG003 ABG320 MWG635B ABG075

MWG911 MWG555a

ABC322A BCD340C BCD340D ABC255 YAtp57A ABC254 MWG042B AdhIntro

MWG851a dSbl -------

group5= ABC451 ABG453 ABC454 PSR156 ABG459 ABG460 Prx2 RbcS Bmy2 mPub

ksuA3C

ABC307B BCD351F BCD828 Gln2 Chs1A Chs1b ksuD22 ABG356 ABG377 ABG358

Pcr1 ksuF2B

ABC306 CDO373 ksuF15 ABG462 ABC468 WG516 ABG471 iBgl BG123a WG996

WG645 Glb3

Glb4 Adh5 Adh8 Pox ABC152D ABC153 BCD410 Dor4A WG110 ABC156A ABC156C

CDO537

CDO64 CDO588 ABG4 ABC157 ABC161 ABC162 Prx1B CDO474c CDO113B His4B

ABG313A

ABC165 ABC166 ABG495B ABA005 ABG002 ABG014 ABR320 ABC167B ABC171

ABC172 ABR334

CDO474B ABG389 ABG005 ABG008 ABG019 Rrn5S1 Crg3A Crg3B ABC174 ABC176

ABA303

Rrn5S2 ABG058 ABG396 BCD131 ABG398 ABG399 ABG499 ABR338 ABG057

ABG703A ABG703b

ABA302 ABG010 His3C ABG654 MWG838 MWG503 cMWG682 MWG902 MWG858

MWG950 ABG315

bBE54C bBE54D ABG316A MWG584 ABG316C ABG316D ABG316E ABG317A

ABG317B ABG318 B15C

AtpbB cMWG691 MWG571B MWG571C MWG571a ABG319B cMWG720 ABG070

MWG798B ABC252

ABG065A ABG072 MWG520A MWG520B MWG878 MWG555b MWG064 MWG680

MWG557 ABC323 F3hA

MWG497 MWG041 -------

group6= ABG452 iPgd2 Hor1 Hor2 Ica1 Cab2 ABC307A BCD351C WG789B Chs3

CDO99 Pcr2

ksuF2A ABG373 ABG464 BCD98 Hor5 Glb1 ABC152B His4A Dor2 ABC160 Aga7

CDO105B

ABC164 ABG494 Act8 ABA002 ABA004 Aga6 ABG387a ABG022B ABG500a ABR337

ABG702

His3B MWG800 RisBPP16 ABG059 AtpbA ABC257 cMWG733 cMWG706a MWG706B

MWG837 MWG912

ABC261 ABG074 ABG055 MWG635C ABC322B BCD340A MWG938 MWG042A

KFP153B -------

group7= iEst9 Cab1 ABG463 WG644 CDO484 WG908 ABC309 CDO504 ABC482

ABC155 ABC310A

ABG495A ABG496 ABG390 ABG391 ABG707 ABG712 ABG314A ABG314B MWG514B

MWG813a

MWG877 MWG851b MWG851C MWG851D -------

unlinked= MWG798a BCD340B KFP153A F3hB

41> sequence group7

sequence #28= group7

42> list loci

Error Linkage Haplotype

Num Name Genotypes Prob Chrom Group Group Class New?

19 iEst9 150 1.00% - group7 - - -

47 Cab1 147 1.00% - group7 - - -

95 ABG463 149 1.00% - group7 - - -

107 WG644 146 1.00% - group7 - - -

124 CDO484 143 1.00% - group7 - - -

125 WG908 150 1.00% - group7 - - -

129 ABC309 147 1.00% - group7 - - -

131 CDO504 143 1.00% - group7 - - -

144 ABC482 142 1.00% - group7 - - -

163 ABC155 148 1.00% - group7 - - -

194 ABC310A 141 1.00% - group7 - - -

200 ABG495A 136 1.00% - group7 - - -

233 ABG496 141 1.00% - group7 - - -

239 ABG390 150 1.00% - group7 - - -

240 ABG391 141 1.00% - group7 - - -

294 ABG707 143 1.00% - group7 - - -

307 ABG712 138 1.00% - group7 - - -

319 ABG314A 150 1.00% - group7 - - -

320 ABG314B 150 1.00% - group7 - - -

330 MWG514B 150 1.00% - group7 - - -

354 MWG813a 146 1.00% - group7 - - -

357 MWG877 150 1.00% - group7 - - -

424 MWG851b 149 1.00% - group7 - - -

425 MWG851C 149 1.00% - group7 - - -

426 MWG851D 149 1.00% - group7 - - -

43> group 7.0 20

Linkage Groups at min LOD 7.00, max Distance 20.0

group1= iEst9 Cab1 ABG463 WG644 CDO484 WG908 ABC309 CDO504 ABC482

ABC155 ABC310A

ABG495A ABG496 ABG390 ABG391 ABG707 ABG712 ABG314A ABG314B MWG514B

MWG813a

MWG877 MWG851b MWG851C MWG851D

44> group 8.0 15

error in sequence: that group is not defined

45> sequence group1

sequence #29= group1

46> group 8.0 15

Linkage Groups at min LOD 8.00, max Distance 15.0

group1= iEst9 Cab1 ABG463 WG644 CDO484 WG908 ABC309 CDO504 ABC482

ABC155 ABC310A

ABG495A ABG496 ABG390 ABG391 ABG707 ABG712 ABG314A ABG314B MWG514B

MWG813a

MWG877 MWG851b MWG851C MWG851D -------

group2= PSR167B ksuA3B ksuA3D ksuD17 Rrn1 ABG474 WG223b ABG20 ABG379

ABC163

ABA006 ABR331 ABC169B Ubi4 ABC170B ABR335 ABG388 ABG001 ABC175 Ubi5

MWG820 B12DA

BCD340E CDO497 MWG684B -------

group3= PSR167 Cxp3 ABG466 ABC152A ABG378 His3D ABG062 MWG620

cMWG652a MWG663_2 -------

group4= PSR154 Nir ABC170A bBE54B MWG934 MWG684A -------

group5= PSR106 ABG387b

47> sequence all

sequence #30= all

warning: marker(s) listed in sequence multiple times...

48> group 7.0

warning: marker(s) listed in sequence multiple times... extras deleted

Linkage Groups at min LOD 7.00, max Distance 50.0

group1= Nar1 Nar7 ABG458 Amy1 Lth PSR167B PSR167 PSR154 Cxp3 PSR106

ksuA3B

ksuA3D ksuD17 Rrn1 ABG466 ABG474 WG223b ABC152A ABG20 Nir ABG378

ABG379 ABC163

ABA006 ABR331 ABC169B Ubi4 ABC170A ABC170B ABR335 ABG387b ABG388

ABG001 ABC175

His3D Ubi5 ABG062 MWG820 MWG620 cMWG652a bBE54B B12DA BCD340E

CDO497 MWG934

MWG663_2 MWG684A MWG684B -------

group2= Ale PSR128 ABC302 Ltp1 mSrh ksuA3A BCD351e ksuA1B CDO348B ABG473

WG530

WG541 Rrn2 BG123b CDO749 Adh6 WG364 ABR313 ABC483 WG889 CDO57B

ABA001 ABC168

Ubi2 ABR336 ABG497 Dor5 ABG395 CDO669B ABG705 ABC706 MWG522 ABG708

MWG502 ABC717

ABG316B ABG064 ABG069 B12DB MWG2040B MWG583 MWG042C MWG920_1 -------

group3= Dhn6 Bmy1 ksuH11 BCD351D Pgk2A ABG366 ABR315 BCD265B ABG472

iAco2

WG1026B WG464 BCD402B CDO669 Adh4 ABG484 WG114 BCD453B ABG313B

ABA003 ABG003

ABG498 ABG054 ABG394 ABG397 ABG500b TubA1 WG622 bAL882 ABC303

cMWG652B bAP91

MWG058 bBE54A MWG634 iHxk2 ABG319A ABG319C B32E MWG635a ABC321

MWG077 -------

group4= Glx ABC455 Brz iEst5 Ubi1 Prx1A ABG312 PSR106B WG420 CDO475

WG789A

BCD298B ABC305 ksuA1A His3A Pgk2B ksuD14C BCD129 Amy2 ABG461 ABC465

WG719 PSR129

CDO673 ABG476 Chi1 Adh7 Tha ABC151 ABC154A Plc Dor4B ABC156d ABC158

ABR303

ABR329 ABG380 WG834 WG380A ABC310b Cat3 ABC167a ABC169A dRpg1 ABG011

ABG022A

ABA301 ABC154B ABG701 ABG704 ABG652 MWG010B ABC308 bBE54E RisP103

MWG089 iPgd1A

MWG036B MWG813B MWG706C MWG836 MWG003 ABG320 MWG635B ABG075

MWG911 MWG555a

ABC322A BCD340C BCD340D ABC255 YAtp57A ABC254 MWG042B AdhIntro

MWG851a dSbl -------

group5= ABC451 ABG453 ABC454 PSR156 ABG459 ABG460 Prx2 RbcS Bmy2 mPub

ksuA3C

ABC307B BCD351F BCD828 Gln2 Chs1A Chs1b ksuD22 ABG356 ABG377 ABG358

Pcr1 ksuF2B

ABC306 CDO373 ksuF15 ABG462 ABC468 WG516 ABG471 iBgl BG123a WG996

WG645 Glb3

Glb4 Adh5 Adh8 Pox ABC152D ABC153 BCD410 Dor4A WG110 ABC156A ABC156C

CDO537

CDO64 CDO588 ABG4 ABC157 ABC161 ABC162 Prx1B CDO474c CDO113B His4B

ABG313A

ABC165 ABC166 ABG495B ABA005 ABG002 ABG014 ABR320 ABC167B ABC171

ABC172 ABR334

CDO474B ABG389 ABG005 ABG008 ABG019 Rrn5S1 Crg3A Crg3B ABC174 ABC176

ABA303

Rrn5S2 ABG058 ABG396 BCD131 ABG398 ABG399 ABG499 ABR338 ABG057

ABG703A ABG703b

ABA302 ABG010 His3C ABG654 MWG838 MWG503 cMWG682 MWG902 MWG858

MWG950 ABG315

bBE54C bBE54D ABG316A MWG584 ABG316C ABG316D ABG316E ABG317A

ABG317B ABG318 B15C

AtpbB cMWG691 MWG571B MWG571C MWG571a ABG319B cMWG720 ABG070

MWG798B ABC252

ABG065A ABG072 MWG520A MWG520B MWG878 MWG555b MWG064 MWG680

MWG557 ABC323 F3hA

MWG497 MWG041 -------

group6= ABG452 iPgd2 Hor1 Hor2 Ica1 Cab2 ABC307A BCD351C WG789B Chs3

CDO99 Pcr2

ksuF2A ABG373 ABG464 BCD98 Hor5 Glb1 ABC152B His4A Dor2 ABC160 Aga7

CDO105B

ABC164 ABG494 Act8 ABA002 ABA004 Aga6 ABG387a ABG022B ABG500a ABR337

ABG702

His3B MWG800 RisBPP16 ABG059 AtpbA ABC257 cMWG733 cMWG706a MWG706B

MWG837 MWG912

ABC261 ABG074 ABG055 MWG635C ABC322B BCD340A MWG938 MWG042A

KFP153B -------

group7= iEst9 Cab1 ABG463 WG644 CDO484 WG908 ABC309 CDO504 ABC482

ABC155 ABC310A

ABG495A ABG496 ABG390 ABG391 ABG707 ABG712 ABG314A ABG314B MWG514B

MWG813a

MWG877 MWG851b MWG851C MWG851D -------

unlinked= MWG798a BCD340B KFP153A F3hB

49> sequence group7

sequence #31= group7

50> order

Linkage Groups at min LOD 3.00, max Distance 50.0

Starting Orders: Size 5, Log-Likelihood 3.00, Searching up to 50 subsets

Informativeness: min #Individuals 1, min Distance 0.9

Placement Threshold-1 3.00, Threshold-2 2.00, Npt-Window 7 ==================================================================== ===========

Linkage group 1, 25 Markers:

19 iEst9 47 Cab1 95 ABG463 107 WG644 124 CDO484

125 WG908 129 ABC309 131 CDO504 144 ABC482 163 ABC155

194 ABC310A 200 ABG495A 233 ABG496 239 ABG390 240 ABG391

294 ABG707 307 ABG712 319 ABG314A 320 ABG314B 330 MWG514B

354 MWG813a 357 MWG877 424 MWG851b 425 MWG851C 426

MWG851D

Most informative subset: 19 425 95 107 124 125 424 131 144 163 194 200 357 354

240 294 307 330 320

Searching for a unique starting order containing 5 of 19 informative loci...

Got one at log-likelihood 6.49

Placing at log-likelihood threshold 3.00...

Start: 200 144 240 124 354

Npt-1: 200 144 240 (239) 124 354

Npt-1: 200 144 240 239 124 (95) 354

Npt-4: 200 (47) 144 240 239 124 95 354

Npt-5: 200 47 (163) 144 240 239 124 95 354

Npt-End: (125) 200 47 163 144 240 239 124 95 354

Npt-7: 125 (357) 200 47 163 144 240 239 124 95 354

Npt-End: 125 357 200 47 163 144 240 239 124 95 354 (426)

Npt-1: 125 357 200 47 163 144 240 239 124 95 354 (425) 426

Npt-1: 125 357 200 47 163 144 240 239 124 95 354 (320) 425 426

Npt-End: (330) 125 357 200 47 163 144 240 239 124 95 354 320 425 426

Npt-5: 330 (131) 125 357 200 47 163 144 240 239 124 95 354 320 425 426

Npt-1: 330 131 (19) 125 357 200 47 163 144 240 239 124 95 354 320 425 426

Npt-5: 330 131 (107) 19 125 357 200 47 163 144 240 239 124 95 354 320 425 426

Npt-7: 330 131 107 (307) 19 125 357 200 47 163 144 240 239 124 95 354 320 425

426

No unique placements for 6 remaining markers

Map:

Markers Distance

330 MWG514B 9.3 cM

131 CDO504 4.4 cM

107 WG644 3.5 cM

307 ABG712 3.5 cM

19 iEst9 2.7 cM

125 WG908 5.6 cM

357 MWG877 4.5 cM

200 ABG495A 7.7 cM

47 Cab1 0.0 cM

163 ABC155 6.4 cM

144 ABC482 5.7 cM

240 ABG391 2.8 cM

239 ABG390 7.9 cM

124 CDO484 2.8 cM

95 ABG463 3.5 cM

354 MWG813a 1.4 cM

320 ABG314B 2.8 cM

425 MWG851C 2.8 cM

426 MWG851D ----------

77.1 cM 19 markers log-likelihood= -235.11

Markers placed relative to above map:

330 131 107 307 19 125 357 200 47 163 144 240 239 124

:--9-:--4-:--3-:--3-:--3-:--6-:--4-:--8-:--0-:--6-:--6-:--3-:--8-:

424 2 ...:....:....:....:....:....:....:....:....:....:....:....:....:....:

319 2 ...:....:....:....:....:....:....:....:....:....:....:....:....:....:

129 2 ...:....:....:....:....:....:....:....:....:....:....:....:....:....:

194 2 ...:....:....:....:....:....:....:....:....:....:....:....:..*.:.**.:

294 2 ...:....:....:....:....:....:....:....:....:....:....:....:.**.:..*.:

233 2 ...:....:....:....:....:....:....:....:.**.:....:..*.:....:....:....:

124 95 354 320 425 426

:--3-:--3-:--1-:--3-:--3-:

424 2 :....:....:....:....:..*.:**.

319 2 :....:....:..*.:.**.:....:...

129 2 :....:....:..*.:.**.:....:...

194 2 :....:....:....:....:....:...

294 2 :....:....:....:....:....:...

233 2 :....:....:....:....:....:... -------------------------------------------------------------------------------

Placing at log-likelihood threshold 2.00...

Start: 330 131 107 307 19 125 357 200 47 163 144 240 239 124 95 354 320 425

426

Npt-5: 330 131 107 307 19 125 357 200 (233) 47 163 144 240 239 124 95 354 320

425 426

No unique placements for 5 remaining markers

Map:

Markers Distance

330 MWG514B 9.3 cM

131 CDO504 4.4 cM

107 WG644 3.5 cM

307 ABG712 3.5 cM

19 iEst9 2.7 cM

125 WG908 5.6 cM

357 MWG877 4.5 cM

200 ABG495A 6.8 cM

233 ABG496 0.7 cM

47 Cab1 0.0 cM

163 ABC155 6.4 cM

144 ABC482 5.7 cM

240 ABG391 2.8 cM

239 ABG390 7.9 cM

124 CDO484 2.8 cM

95 ABG463 3.5 cM

354 MWG813a 1.4 cM

320 ABG314B 2.8 cM

425 MWG851C 2.8 cM

426 MWG851D ----------

76.9 cM 20 markers log-likelihood= -236.54

Markers placed relative to above map:

330 131 107 307 19 125 357 200 233 47 163 144 240 239

:--9-:--4-:--3-:--3-:--3-:--6-:--4-:--7-:--1-:--0-:--6-:--6-:--3-:

424 2 ...:....:....:....:....:....:....:....:....:....:....:....:....:....:

129 2 ...:....:....:....:....:....:....:....:....:....:....:....:....:....:

319 2 ...:....:....:....:....:....:....:....:....:....:....:....:....:....:

194 2 ...:....:....:....:....:....:....:....:....:....:....:....:....:..*.:

294 2 ...:....:....:....:....:....:....:....:....:....:....:....:....:.**.:

239 124 95 354 320 425 426

:--8-:--3-:--3-:--1-:--3-:--3-:

424 2 :....:....:....:....:....:..*.:**.

129 2 :....:....:....:..*.:.**.:....:...

319 2 :....:....:....:..*.:.**.:....:...

194 2 :.**.:....:....:....:....:....:...

294 2 :..*.:....:....:....:....:....:...

order1= MWG514B CDO504 WG644 ABG712 iEst9 WG908 MWG877 ABG495A

ABG496 Cab1

ABC155 ABC482 ABG391 ABG390 CDO484 ABG463 MWG813a ABG314B MWG851C

MWG851D

other1= MWG851b ABC309 ABG314A ABC310A ABG707 ==================================================================== ===========

51> sequence 330 131 107 307 19 125 357 200 233 47 163 144 240 239 124 95 354 320

425 426

sequence #32= 330 131 107 307 19 125 357 200 233 47 163 144 240 239 124 95 354

320 425 426

52> map ==================================================================== ===========

Map:

Markers Distance

330 MWG514B 9.3 cM

131 CDO504 4.4 cM

107 WG644 3.5 cM

307 ABG712 3.5 cM

19 iEst9 2.7 cM

125 WG908 5.6 cM

357 MWG877 4.5 cM

200 ABG495A 6.8 cM

233 ABG496 0.7 cM

47 Cab1 0.0 cM

163 ABC155 6.4 cM

144 ABC482 5.7 cM

240 ABG391 2.8 cM

239 ABG390 7.9 cM

124 CDO484 2.8 cM

95 ABG463 3.5 cM

354 MWG813a 1.4 cM

320 ABG314B 2.8 cM

425 MWG851C 2.8 cM

426 MWG851D ----------

76.9 cM 20 markers log-likelihood= -236.54 ==================================================================== ===========

53> make chromosome chromx

chromosomes defined: leah1a chrom5a chromx

54> anchor chromx

MWG514B - anchor locus on chromx

CDO504 - anchor locus on chromx

WG644 - anchor locus on chromx

ABG712 - anchor locus on chromx

iEst9 - anchor locus on chromx

WG908 - anchor locus on chromx

MWG877 - anchor locus on chromx

ABG495A - anchor locus on chromx

ABG496 - anchor locus on chromx

Cab1 - anchor locus on chromx

ABC155 - anchor locus on chromx

ABC482 - anchor locus on chromx

ABG391 - anchor locus on chromx

ABG390 - anchor locus on chromx

CDO484 - anchor locus on chromx

ABG463 - anchor locus on chromx

MWG813a - anchor locus on chromx

ABG314B - anchor locus on chromx

MWG851C - anchor locus on chromx

MWG851D - anchor locus on chromx

chromosome chromx anchor(s): iEst9 Cab1 ABG463 WG644 CDO484 WG908 CDO504

ABC482

ABC155 ABG495A ABG496 ABG390 ABG391 ABG712 ABG314B MWG514B

MWG813a MWG877

MWG851C MWG851D

55> framework chromx

setting framework for chromosome chromx... ==================================================================== ===========

chromx framework:

Markers Distance

330 MWG514B 9.3 cM

131 CDO504 4.4 cM

107 WG644 3.5 cM

307 ABG712 3.5 cM

19 iEst9 2.7 cM

125 WG908 5.6 cM

357 MWG877 4.5 cM

200 ABG495A 6.8 cM

233 ABG496 0.7 cM

47 Cab1 0.0 cM

163 ABC155 6.4 cM

144 ABC482 5.7 cM

240 ABG391 2.8 cM

239 ABG390 7.9 cM

124 CDO484 2.8 cM

95 ABG463 3.5 cM

354 MWG813a 1.4 cM

320 ABG314B 2.8 cM

425 MWG851C 2.8 cM

426 MWG851D ----------

76.9 cM 20 markers log-likelihood= -236.54 ==================================================================== ===========

56> help chromosome

unrecognized command or help topic: 'chromosome'

Type 'help' for a list of commands and topics.

Type 'help ' for more information about a particular topic.

Type 'help ' for more help with a particular command.

57> help make chromosome ==================================================================== =========

MAKE CHROMOSOME Command

Description: Specify the Name(s) or Chromosome(s)

Help Topic: (6) Genome Analysis Features

Argument:

The 'make chromosome' command declares one or more named chromosomes

to exist. (Upon creation, no markers are assigned to the new

chromosome). There is presently no way to completely undo the 'make

chromosome' command -- once declared, a chromosme exists until the data

file is re-prepared. Luckily, "extra" chromosomes may be safely

ignored if no loci are assigned to them. ==================================================================== =========

58> help framework ==================================================================== =========

FRAMEWORK Command

Description: Set the Framework Map Order for a Chromosome

Help Topic: (6) Genome Analysis Features

Argument:

MAPMAKER/EXP Commands and Options:

(1) GENERAL INFORMATION ON MAPMAKER VERSION 3.0:

about mapmaker.............License and Contact Information for MAPMAKER

release notes..............Information on the Release Notes

starting mapmaker..........How to Start MAPMAKER and Available Options

tutorial...................Information on the MAPMAKER Tutorial

entering commands..........How to Type Commands Into MAPMAKER

abbreviating commands......How to Abbreviate Commands You Type

keyboard editing...........Editing Commands and Sequences Using the Keyboard

postscript output..........What to Do With MAPMAKER PostScript Graphic Output

(2) BASIC MAPMAKER COMMANDS:

help (?)...................Read On-Line Help Information

photo......................Begin Saving MAPMAKER Output to a Text File

prepare data (pd)..........Prepares a New Data Set for Analysis

load data (ld).............Load Data Set for Analysis

save data..................Save Status, Mapping Results, etc.

quit (q)...................Quit from a MAPMAKER Session

(3) SEQUENCE COMMAND AND RELATED FEATURES:

sequence (s)...............Select the Loci and Order(s) You Wish to Analyze

history (h)................List Previous Sequences

expand sequence (x)........Set the Sequence, Expanding Names

insert (i).................Insert a Marker into the Sequence

append (a).................Append Marker(s) to the End of the Sequence

delete (d).................Deletes a Marker or Markers from the Sequence

edit sequence (e)..........Edit a Sequence Using the Keyboard

let (l)....................Name a Sequence

names (n)..................List the Named Sequences

forget named sequence......Erase a Named Sequence

translate (t)..............Show the Names and Numbers of Loci in the Sequence

(4) TWO-POINT (PAIRWISE) ANALYSIS COMMANDS:

two point..................Compute Pairwise Distances and LOD Scores

lod table..................Print All Two-Point Data for the Current Sequence

big lods...................List Linked Pairs of Markers in Sequence

near.......................List Markers in Sequence Near Other Marker(s)

links......................Find Any Markers Near Given Marker(s)

pairwise...................Print Two-Point Data Between Sequence and Other Loci

group......................Separate Markers in Sequence into Linkage Groups

default linkage criteria...LOD and Distance Thresholds for Two-Point Linkage

suggest subset.............Find Highly-Informative Well-Spaced Markers

informativeness criteria...Criteria for Finding Highly-Informative Markers

(5) MULTIPOINT ANALYSIS COMMANDS:

map (m)....................Compute and Print a Maximum Likelihood Map

draw map...................Compute and Draw a Maximum Likelihood Map

compare (c)................Compare Likelihoods of Many Map Orders

try........................Insert Markers into an Order and Compare Likelihoods

ripple.....................Test a Map Order by Permuting Local Orders

order......................Automatically Build Map Orders from Scratch

build......................Sequentially Add New Markers into a Known Map Order

multipoint criteria........Mapping Criteria for 'Order', 'Build', etc.

(6) GENOME ANALYSIS FEATURES:

make chromosome............Specify the Name(s) or Chromosome(s)

assign.....................Assign Markers to a Chromosome by Linkage

attach.....................Assign Markers to a Chromosome, Regardless

unassign...................Unassign Markers from All Chromosomes

anchor.....................Specify the Anchor Loci for a Chromosome

framework..................Set the Framework Map Order for a Chromosome

place......................Place Markers Relative to a Chromosome Framework

together...................Places Loci Together into the Framework

list loci (ll).............List Various Facts about Some Loci

list status (ls)...........List Mapping Status for Some Loci

list chromosomes (lc)......List the Number of Markers Mapped to Each Chromosome

list assignments (la)......List the Markers Assigned to Each Chromosome

draw chromosome............Draw Frameworks and Placements in PostScript

draw all chromosomes.......Draw All Frameworks and Placements in PostScript

age........................Declare Markers as 'Old' or 'New'

class......................Declare the Class for Markers

make class.................Define New Class(es) of Markers

(7) SYSTEMATIC ERROR DETECTION MECHANISM:

error detection............Turn the Typing Error Detection Mechanism On/Off

error probability..........Apriori Probability of Genotyping Error

error thresholds...........LOD-Error Thresholds for Candidate Errors

genotypes..................Display a Map at the Individual Crossover Level

(8) THREE-POINT ANALYSIS MECHANISM:

use three point............Whether Three-Point Analysis Will Be Used

three point................Pre-Compute Three-Point Log-Likelihoods

triple linkage criteria....Linkage Criteria for 'Three Point' Triples

triple exclusion criteria..Log-Likelihood Thresholds for Excluding a Triple

triple error detection.....Error Detection Option for Three-Point Analysis

forget three point.........Forget Pre-Computed Three-Point Likelihoods

(9) JOINING HAPLOTYPES IN LARGE DATA SETS:

join haplotypes............Collect Unseparated Markers into Haplotype Groups

list haplotypes (lh).......List Haplotype Groups for Certain Loci

restore haplotypes.........Un-Join Particular Haplotype Groups

(10) MAPMAKER PARAMETERS AND OPTIONS:

print names................Display Locus Names Instead of Numbers

print maps.................Print All Maps for Placed Markers

tolerance..................Convergence Tolerance

auto save data.............Automatically Save Data

units......................Units of Map Distance, Either cM or RF

centimorgan function.......Default Map Function, Either Haldane or Kosambi

more mode..................Enable Pauses after Each Screen of Output

(11) MISCELLANEOUS COMMANDS:

previous commands (p)......Review and Re-enter Previous Commands

review output..............Review Previous MAPMAKER Output

change directory (cd)......Change Default Directory Used by MAPMAKER

run........................Accept Commands from an Input File

time.......................Print Current Time

comment....................Enter a Comment into the Transcript

remark.....................Same as 'Comment'

system.....................Run System Command(s) Without Quitting MAPMAKER

import data................Load Data from a Database

export data................Save Data to a Database

wizard mode................Danger Will Robinson, Danger!

61> help ==================================================================== =========

MAPMAKER/EXP Commands and Options:

(1) GENERAL INFORMATION ON MAPMAKER VERSION 3.0:

about mapmaker.............License and Contact Information for MAPMAKER

release notes..............Information on the Release Notes

starting mapmaker..........How to Start MAPMAKER and Available Options

tutorial...................Information on the MAPMAKER Tutorial

entering commands..........How to Type Commands Into MAPMAKER

abbreviating commands......How to Abbreviate Commands You Type

keyboard editing...........Editing Commands and Sequences Using the Keyboard

postscript output..........What to Do With MAPMAKER PostScript Graphic Output

(2) BASIC MAPMAKER COMMANDS:

help (?)...................Read On-Line Help Information

photo......................Begin Saving MAPMAKER Output to a Text File

prepare data (pd)..........Prepares a New Data Set for Analysis

load data (ld).............Load Data Set for Analysis

save data..................Save Status, Mapping Results, etc.

quit (q)...................Quit from a MAPMAKER Session

(3) SEQUENCE COMMAND AND RELATED FEATURES:

sequence (s)...............Select the Loci and Order(s) You Wish to Analyze

history (h)................List Previous Sequences

expand sequence (x)........Set the Sequence, Expanding Names

insert (i).................Insert a Marker into the Sequence

append (a).................Append Marker(s) to the End of the Sequence

delete (d).................Deletes a Marker or Markers from the Sequence

edit sequence (e)..........Edit a Sequence Using the Keyboard

let (l)....................Name a Sequence

names (n)..................List the Named Sequences

forget named sequence......Erase a Named Sequence

translate (t)..............Show the Names and Numbers of Loci in the Sequence

(4) TWO-POINT (PAIRWISE) ANALYSIS COMMANDS:

two point..................Compute Pairwise Distances and LOD Scores

lod table..................Print All Two-Point Data for the Current Sequence

big lods...................List Linked Pairs of Markers in Sequence

near.......................List Markers in Sequence Near Other Marker(s)

links......................Find Any Markers Near Given Marker(s)

pairwise...................Print Two-Point Data Between Sequence and Other Loci

group......................Separate Markers in Sequence into Linkage Groups

default linkage criteria...LOD and Distance Thresholds for Two-Point Linkage

suggest subset.............Find Highly-Informative Well-Spaced Markers

informativeness criteria...Criteria for Finding Highly-Informative Markers

(5) MULTIPOINT ANALYSIS COMMANDS:

map (m)....................Compute and Print a Maximum Likelihood Map

draw map...................Compute and Draw a Maximum Likelihood Map

compare (c)................Compare Likelihoods of Many Map Orders

try........................Insert Markers into an Order and Compare Likelihoods

ripple.....................Test a Map Order by Permuting Local Orders

order......................Automatically Build Map Orders from Scratch

build......................Sequentially Add New Markers into a Known Map Order

multipoint criteria........Mapping Criteria for 'Order', 'Build', etc.

(6) GENOME ANALYSIS FEATURES:

make chromosome............Specify the Name(s) or Chromosome(s)

assign.....................Assign Markers to a Chromosome by Linkage

attach.....................Assign Markers to a Chromosome, Regardless

unassign...................Unassign Markers from All Chromosomes

anchor.....................Specify the Anchor Loci for a Chromosome

framework..................Set the Framework Map Order for a Chromosome

place......................Place Markers Relative to a Chromosome Framework

together...................Places Loci Together into the Framework

list loci (ll).............List Various Facts about Some Loci

list status (ls)...........List Mapping Status for Some Loci

list chromosomes (lc)......List the Number of Markers Mapped to Each Chromosome

list assignments (la)......List the Markers Assigned to Each Chromosome

draw chromosome............Draw Frameworks and Placements in PostScript

draw all chromosomes.......Draw All Frameworks and Placements in PostScript

age........................Declare Markers as 'Old' or 'New'

class......................Declare the Class for Markers

make class.................Define New Class(es) of Markers

(7) SYSTEMATIC ERROR DETECTION MECHANISM:

error detection............Turn the Typing Error Detection Mechanism On/Off

error probability..........Apriori Probability of Genotyping Error

error thresholds...........LOD-Error Thresholds for Candidate Errors

genotypes..................Display a Map at the Individual Crossover Level

(8) THREE-POINT ANALYSIS MECHANISM:

use three point............Whether Three-Point Analysis Will Be Used

three point................Pre-Compute Three-Point Log-Likelihoods

triple linkage criteria....Linkage Criteria for 'Three Point' Triples

triple exclusion criteria..Log-Likelihood Thresholds for Excluding a Triple

triple error detection.....Error Detection Option for Three-Point Analysis

forget three point.........Forget Pre-Computed Three-Point Likelihoods

(9) JOINING HAPLOTYPES IN LARGE DATA SETS:

join haplotypes............Collect Unseparated Markers into Haplotype Groups

list haplotypes (lh).......List Haplotype Groups for Certain Loci

restore haplotypes.........Un-Join Particular Haplotype Groups

(10) MAPMAKER PARAMETERS AND OPTIONS:

print names................Display Locus Names Instead of Numbers

print maps.................Print All Maps for Placed Markers

tolerance..................Convergence Tolerance

auto save data.............Automatically Save Data

units......................Units of Map Distance, Either cM or RF

centimorgan function.......Default Map Function, Either Haldane or Kosambi